Paenibacillus alvei DSM 29

RodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus alvei DSM 29 is a Gram-variable, rod-shaped bacterium. It is classified as a facultative anaerobe, indicating that it can grow in both aerobic and anaerobic conditions, which allows it to thrive in diverse environments. This adaptability is an important trait for survival in fluctuating ecological niches. The strain DSM 29 is characterized by having four replicons, which suggests a complex genomic structure that may contribute to its metabolic versatility and capacity for adaptation. The available genetic data for this organism includes several accessions: NZ_AMBZ01000025.1, AMBZ00000000.1, NZ_AMBZ01000023.1, and NZ_AMBZ01000024.1, indicating that its genomic information is documented and accessible for further research. The ability of Paenibacillus alvei DSM 29 to thrive in varying oxygen levels may provide insights into its ecological role, potentially contributing to nutrient cycling in various environments. Its presence in soil and plant-associated habitats suggests it may play a part in plant growth promotion and soil health, reinforcing the importance of microbial diversity in ecosystem functioning. Understanding the traits of Paenibacillus alvei DSM 29 can help inform its applications in agriculture or bioremediation efforts, emphasizing the significance of this bacterium in ecological contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus alvei
StrainDSM 29

Profile

Physiology
Gram staining propertiesVariable
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus alvei DSM 29 plasmid pPAV14, whole genome shotgun

Gene Summary

Adenine Count

4192 bp

Thymine Count

3836 bp

Guanine Count

3329 bp

Cytosine Count

2754 bp

Genome Length

14111 bp

Protein-coding Genes

15 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
na+/myo-inositol cotransporterPAV_1c04170P31448Negative398790 - 40037957799.1
inositol 2-dehydrogenasePAV_1c04180Not AvailableNegative400477 - 40153539181.1
inosose dehydratase 2PAV_1c04190Q4V1F4Negative401551 - 40244733547.1
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolasePAV_1c04200Q5KYR0Negative402734 - 40467470304.6
methylmalonate semialdehyde dehydrogenase 3PAV_1c04210Q63B74Negative404690 - 40614153072.8
tagatose-bisphosphate aldolasePAV_1c04220A9MPP7Negative406219 - 40706730445.8
5-dehydro-2-deoxygluconokinase iolcPAV_1c04230C3PAZ0Negative407113 - 40810836697.6
oxidoreductase domain proteinPAV_1c04240O05389Positive408505 - 40950336288.2
5-deoxy-glucuronate isomerase iolbPAV_1c04250A4IPB4Positive409561 - 41036730259.5
hth-type transcriptional regulator degaPAV_1c04260Not AvailablePositive410330 - 41148742343.8

Displaying genes 1151 – 1160 of 6897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

520 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 520 metabolites

Health Effects

No health effects information available for this bacterium.