Pseudomonas viridiflava ICMP 13104

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas viridiflava ICMP 13104 is a Gram-negative, aerobic bacterium characterized by its rod shape and mobility. This species is free-living, which indicates its ability to thrive independently in various environments without dependence on host organisms. The bacterium contains a single replicon, suggesting a streamlined genomic structure that may contribute to its adaptability in diverse ecological niches. The mobility of Pseudomonas viridiflava ICMP 13104 allows for dynamic interactions with its surroundings, facilitating colonization and resource acquisition in various habitats. In terms of ecological significance, Pseudomonas species are often involved in soil health and plant interactions. Their free-living nature and mobility may aid in nutrient cycling and bioremediation processes, as they can effectively colonize different substrates and utilize a range of organic compounds. The presence of Pseudomonas viridiflava in agricultural or natural environments could have implications for plant health and soil ecology, potentially influencing plant growth or serving as a biocontrol agent against plant pathogens. This bacterium is cataloged under the accession number LKEJ00000000.1, which provides a reference for genomic studies and further research into its characteristics and environmental roles. Overall, Pseudomonas viridiflava ICMP 13104 exemplifies a versatile and ecologically significant microorganism within the Pseudomonas genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas viridiflava
StrainICMP 13104

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas viridiflava ICMP 13104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas viridiflava ICMP 13104


Gene Summary

Adenine Count

1119647 bp

Thymine Count

1157931 bp

Guanine Count

1662977 bp

Cytosine Count

1606517 bp

Genome Length

5547180 bp

Protein-coding Genes

4376 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysozymeAO067_02090Not AvailableNegative947722 - 94823118525.1
Glycoside hydrolase family 19 proteinAO067_02095P44187Negative948228 - 94877319769.7
hypothetical proteinAO067_02100Not AvailableNegative948872 - 9490546723.86
Putative tail-collar fibre proteinAO067_02105Not AvailableNegative949063 - 94983926032.1
hypotheticalAO067_02110Not AvailableNegative950170 - 95072419100.5
Tail proteinAO067_02115Not AvailableNegative950735 - 95133422293.7
Tail proteinAO067_02120P75981Negative951322 - 95236236966.8
Putative tail proteinAO067_02125Not AvailableNegative952352 - 95275015265.0
Putative base plate assembly proteinAO067_02130Not AvailableNegative952747 - 95325917881.5
Tail proteinAO067_02135Not AvailableNegative953256 - 95438341003.5

Displaying genes 1 – 10 of 4456 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

298 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 298 metabolites

Health Effects

No health effects information available for this bacterium.