Flammeovirga sp. MY04

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga sp. MY04 is a Gram-negative, rod-shaped bacterium characterized by its unique genomic structure, which comprises three replicons. This feature is notable as it may suggest a complex regulatory mechanism for gene expression and replication, potentially contributing to its adaptability in various environments. The organism has been cataloged with multiple accessions, specifically NZ_CP003562.2, NZ_CP003560.2, and NZ_CP003561.2, which provide a basis for further genetic and functional studies. The presence of three distinct replicons may also imply a diverse metabolic capability, enabling Flammeovirga sp. MY04 to thrive in different ecological niches. The classification as a Gram-negative bacterium indicates that Flammeovirga sp. MY04 possesses an outer membrane containing lipopolysaccharides, which can play a crucial role in its interaction with the environment, including its resistance to certain antibiotics and its ability to engage in symbiotic relationships with other organisms. In summary, Flammeovirga sp. MY04's Gram-negative status, rod shape, and genomic complexity with three replicons highlight its potential for diverse metabolic functions and ecological roles. These traits suggest that this bacterium could be an important player in its ecosystem, possibly involved in nutrient cycling or other essential biological processes. Further research may reveal more about its ecological significance and applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga sp. MY04
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga sp. MY04 chromosome 2, complete sequence.

Gene Summary

Adenine Count

711934 bp

Thymine Count

719087 bp

Guanine Count

372899 bp

Cytosine Count

384571 bp

Genome Length

2188491 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
parb n-terminal domain-containing proteinMY04_RS20350Not AvailableNegative6755 - 813452634.1
helix-turn-helix domain-containing proteinMY04_RS20355Not AvailableNegative8147 - 897730706.2
replication initiation proteinMY04_RS20360Not AvailablePositive10381 - 1154144246.4
dna-directed rna polymerase subunit alphaMY04_RS20365Not AvailablePositive12086 - 1308137229.8
duf4493 domain-containing proteinMY04_RS20370Not AvailableNegative13257 - 1373618284.0
ytfj family proteinMY04_RS20375Not AvailablePositive14159 - 1474622773.4
serine dehydratase subunit alpha family proteinMY04_RS20380Not AvailablePositive14809 - 1610145750.8
hypothetical proteinMY04_RS20385Not AvailableNegative16380 - 1773253171.4
pyridoxal-dependent decarboxylaseMY04_RS20390Not AvailableNegative18272 - 1949846288.2
glycosyl hydrolase 53 family proteinMY04_RS20395Not AvailablePositive19717 - 2087745088.8

Displaying genes 31 – 40 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001650N-acetyl-9-O-acetylneuraminateC13H20NO10Chemical structure of N-acetyl-9-O-acetylneuraminateNot available
Average350.301Da
Monoisotopic350.109269428Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003810propanoyl phosphateC3H5O5PChemical structure of propanoyl phosphate121-69-7
Average152.043Da
Monoisotopic151.9885574Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da
BASm0010825N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideC8H13N2O9PChemical structure of N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average312.172Da
Monoisotopic312.0369642Da

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.