Flammeovirga sp. MY04

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga sp. MY04 is a Gram-negative, rod-shaped bacterium characterized by its unique genomic structure, which comprises three replicons. This feature is notable as it may suggest a complex regulatory mechanism for gene expression and replication, potentially contributing to its adaptability in various environments. The organism has been cataloged with multiple accessions, specifically NZ_CP003562.2, NZ_CP003560.2, and NZ_CP003561.2, which provide a basis for further genetic and functional studies. The presence of three distinct replicons may also imply a diverse metabolic capability, enabling Flammeovirga sp. MY04 to thrive in different ecological niches. The classification as a Gram-negative bacterium indicates that Flammeovirga sp. MY04 possesses an outer membrane containing lipopolysaccharides, which can play a crucial role in its interaction with the environment, including its resistance to certain antibiotics and its ability to engage in symbiotic relationships with other organisms. In summary, Flammeovirga sp. MY04's Gram-negative status, rod shape, and genomic complexity with three replicons highlight its potential for diverse metabolic functions and ecological roles. These traits suggest that this bacterium could be an important player in its ecosystem, possibly involved in nutrient cycling or other essential biological processes. Further research may reveal more about its ecological significance and applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga sp. MY04
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga sp. MY04 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

28175 bp

Thymine Count

28911 bp

Guanine Count

11789 bp

Cytosine Count

14038 bp

Genome Length

82913 bp

Protein-coding Genes

71 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1007220 - 1007232Not Available
Structural proteinMY04_RS24030Not AvailableNegative1017852 - 101842722103.0
Virion morphogenesisMY04_RS24035Not AvailableNegative1018521 - 101980149123.9
IntegraseMY04_RS24040Not AvailableNegative1019834 - 102102145232.9
duf1320 family proteinMY04_RS24045Not AvailableNegative1021024 - 102143715819.5
Terminase large subunitMY04_RS24050Not AvailableNegative1021442 - 102293857505.1
phage terminase small subunit-related proteinMY04_RS24055Not AvailableNegative1022928 - 102338317608.0
Capsid and scaffold proteinMY04_RS24060Not AvailablePositive1023506 - 102440233366.7
Structural proteinMY04_RS24065Not AvailablePositive1024405 - 102526832062.0
hypothetical proteinMY04_RS24070Not AvailablePositive1025490 - 10257329623.29

Displaying genes 1 – 10 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000841L-arabinono-1,4-lactoneC5H8O5Chemical structure of L-arabinono-1,4-lactoneNot available
Average148.114Da
Monoisotopic148.037173358Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001864Cr(6+)CrChemical structure of Cr(6+)Not available
Average51.9961Da
Monoisotopic51.9405119Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002147N-ethylsuccinimideC6H9NO2Chemical structure of N-ethylsuccinimide2314-78-5
Average127.1412Da
Monoisotopic127.0633285Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm00025382-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateC6H3O4Chemical structure of 2-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateNot available
Average139.087Da
Monoisotopic139.0036822Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.