Photorhabdus luminescens subsp. sonorensis str. Caborca

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus luminescens subsp. sonorensis str. Caborca is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain is classified as a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The genomic information for this strain is cataloged under the accession number SBIJ00000000.1. Notably, it has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria. This can be advantageous for rapid replication and adaptation to environmental changes. Photorhabdus luminescens subsp. sonorensis is part of a broader ecological niche often associated with nematodes, where it plays a significant role in the microbial community. Its luminescent properties may serve as a factor in its ecological interactions, potentially aiding in communication or signaling within its environment. Understanding the traits of this strain contributes to a deeper appreciation of its role in the ecosystem, particularly in relation to its interactions with other organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus luminescens
Strainsubsp. sonorensis Caborca

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus luminescens subsp. sonorensis str. Caborca
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus luminescens subsp. sonorensis strain Caborca

Gene Summary

Adenine Count

1495885 bp

Thymine Count

1510179 bp

Guanine Count

1121691 bp

Cytosine Count

1099827 bp

Genome Length

5244142 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

274 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-3-polyprenylbenzoate decarboxylaseEP164_16420Not AvailablePositive3737151 - 373862355382.0
nad(p)h-flavin reductaseEP164_16425Not AvailablePositive3738634 - 373933526372.7
acetyl-coa c-acyltransferase fadaEP164_16430Not AvailableNegative3739541 - 374070741412.3
fatty acid oxidation complex subunit alpha fadbEP164_16435Not AvailableNegative3740719 - 374290579241.1
xaa-pro dipeptidaseEP164_16440Not AvailablePositive3743180 - 374451450854.7
impact family proteinEP164_16445Not AvailablePositive3744514 - 374512522155.8
trk system potassium transporter trkhEP164_16450Not AvailablePositive3745163 - 374661452971.3
menaquinone-dependent protoporphyrinogen ix dehydrogenaseEP164_16455Not AvailablePositive3746638 - 374717420620.2
porinEP164_16470Not AvailablePositive3748801 - 375020753009.9
hypothetical proteinEP164_16475Not AvailablePositive3750244 - 37504507779.65

Displaying genes 3081 – 3090 of 4250 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.