Photorhabdus luminescens subsp. sonorensis str. Caborca

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus luminescens subsp. sonorensis str. Caborca is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain is classified as a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The genomic information for this strain is cataloged under the accession number SBIJ00000000.1. Notably, it has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria. This can be advantageous for rapid replication and adaptation to environmental changes. Photorhabdus luminescens subsp. sonorensis is part of a broader ecological niche often associated with nematodes, where it plays a significant role in the microbial community. Its luminescent properties may serve as a factor in its ecological interactions, potentially aiding in communication or signaling within its environment. Understanding the traits of this strain contributes to a deeper appreciation of its role in the ecosystem, particularly in relation to its interactions with other organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus luminescens
Strainsubsp. sonorensis Caborca

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus luminescens subsp. sonorensis str. Caborca
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus luminescens subsp. sonorensis strain Caborca

Gene Summary

Adenine Count

1495885 bp

Thymine Count

1510179 bp

Guanine Count

1121691 bp

Cytosine Count

1099827 bp

Genome Length

5244142 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

274 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine abc transporter atp-binding protein thiqEP164_12830Not AvailablePositive2892367 - 289307425877.4
hcp family type vi secretion system effectorEP164_12835Not AvailablePositive2893245 - 289372417994.0
hypothetical proteinEP164_12840Not AvailablePositive2893727 - 289446728458.1
dna polymerase iiEP164_12845Not AvailablePositive2895142 - 289749090309.4
rna polymerase-associated protein rapaEP164_12850Not AvailablePositive2897671 - 2900577110819.0
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaEP164_12855Not AvailablePositive2900673 - 290132324949.1
co-chaperone djlaEP164_12860Not AvailableNegative2901569 - 290239031081.8
lps assembly protein lptdEP164_12865Not AvailablePositive2902575 - 290489988764.0
peptidylprolyl isomerase suraEP164_12870Not AvailablePositive2904970 - 290627148370.1
4-hydroxythreonine-4-phosphate dehydrogenase pdxaEP164_12875Not AvailablePositive2906249 - 290726836322.1

Displaying genes 2431 – 2440 of 4250 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.