Photorhabdus luminescens subsp. sonorensis str. Caborca

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus luminescens subsp. sonorensis str. Caborca is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain is classified as a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The genomic information for this strain is cataloged under the accession number SBIJ00000000.1. Notably, it has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria. This can be advantageous for rapid replication and adaptation to environmental changes. Photorhabdus luminescens subsp. sonorensis is part of a broader ecological niche often associated with nematodes, where it plays a significant role in the microbial community. Its luminescent properties may serve as a factor in its ecological interactions, potentially aiding in communication or signaling within its environment. Understanding the traits of this strain contributes to a deeper appreciation of its role in the ecosystem, particularly in relation to its interactions with other organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus luminescens
Strainsubsp. sonorensis Caborca

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus luminescens subsp. sonorensis str. Caborca
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus luminescens subsp. sonorensis strain Caborca

Gene Summary

Adenine Count

1495885 bp

Thymine Count

1510179 bp

Guanine Count

1121691 bp

Cytosine Count

1099827 bp

Genome Length

5244142 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

274 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hcp family type vi secretion system effectorEP164_11845Not AvailableNegative2686473 - 268695218160.5
duf2645 family proteinEP164_11850Not AvailableNegative2687217 - 268752812092.1
4-hydroxyphenylacetate catabolism regulatory protein hpaaEP164_11855Not AvailableNegative2687842 - 268873234434.1
4-hydroxyphenylacetate permeaseEP164_11860Not AvailableNegative2688757 - 269013350806.9
4-hydroxy-2-oxoheptanedioate aldolaseEP164_11865Not AvailableNegative2690230 - 269103628973.0
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseEP164_11870Not AvailableNegative2691048 - 269185129523.4
nad-dependent succinate-semialdehyde dehydrogenaseEP164_11875Not AvailableNegative2691856 - 269334653262.8
bcr/cfla family multidrug efflux mfs transporterEP164_11880Not AvailableNegative2693336 - 269456544235.7
5-carboxymethyl-2-hydroxymuconate delta-isomeraseEP164_11885Not AvailableNegative2694568 - 269495414710.7
3,4-dihydroxyphenylacetate 2,3-dioxygenaseEP164_11890Not AvailableNegative2694968 - 269584633011.3

Displaying genes 2271 – 2280 of 4250 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.