Photorhabdus luminescens subsp. sonorensis str. Caborca

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus luminescens subsp. sonorensis str. Caborca is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain is classified as a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The genomic information for this strain is cataloged under the accession number SBIJ00000000.1. Notably, it has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria. This can be advantageous for rapid replication and adaptation to environmental changes. Photorhabdus luminescens subsp. sonorensis is part of a broader ecological niche often associated with nematodes, where it plays a significant role in the microbial community. Its luminescent properties may serve as a factor in its ecological interactions, potentially aiding in communication or signaling within its environment. Understanding the traits of this strain contributes to a deeper appreciation of its role in the ecosystem, particularly in relation to its interactions with other organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus luminescens
Strainsubsp. sonorensis Caborca

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus luminescens subsp. sonorensis str. Caborca
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus luminescens subsp. sonorensis strain Caborca

Gene Summary

Adenine Count

1495885 bp

Thymine Count

1510179 bp

Guanine Count

1121691 bp

Cytosine Count

1099827 bp

Genome Length

5244142 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

274 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftspEP164_09920Not AvailableNegative2251456 - 225287752432.9
1-acylglycerol-3-phosphate o-acyltransferaseEP164_09925Not AvailableNegative2253269 - 225401227538.0
dna topoisomerase iv subunit aEP164_09930Not AvailableNegative2254075 - 225632783632.1
dna topoisomerase iv subunit bEP164_09935Not AvailableNegative2256371 - 225826670167.7
esterase yqiaEP164_09940Not AvailableNegative2258339 - 225894722741.3
3',5'-cyclic-amp phosphodiesteraseEP164_09945Not AvailableNegative2259079 - 225991831404.4
adp-ribose diphosphataseEP164_09950Not AvailableNegative2260018 - 226065924230.9
outer membrane channel protein tolcEP164_09955Not AvailablePositive2261019 - 226239250499.5
duf2628 domain-containing proteinEP164_09960Not AvailableNegative2262517 - 226291815552.0
duf1190 family proteinEP164_09965Not AvailablePositive2263355 - 226406224381.4

Displaying genes 1911 – 1920 of 4250 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.