Photorhabdus luminescens subsp. sonorensis str. Caborca

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus luminescens subsp. sonorensis str. Caborca is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This strain is classified as a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The genomic information for this strain is cataloged under the accession number SBIJ00000000.1. Notably, it has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria. This can be advantageous for rapid replication and adaptation to environmental changes. Photorhabdus luminescens subsp. sonorensis is part of a broader ecological niche often associated with nematodes, where it plays a significant role in the microbial community. Its luminescent properties may serve as a factor in its ecological interactions, potentially aiding in communication or signaling within its environment. Understanding the traits of this strain contributes to a deeper appreciation of its role in the ecosystem, particularly in relation to its interactions with other organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus luminescens
Strainsubsp. sonorensis Caborca

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus luminescens subsp. sonorensis str. Caborca
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus luminescens subsp. sonorensis strain Caborca

Gene Summary

Adenine Count

1495885 bp

Thymine Count

1510179 bp

Guanine Count

1121691 bp

Cytosine Count

1099827 bp

Genome Length

5244142 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

274 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion proteinEP164_05085Not AvailableNegative1199296 - 11995989899.72
hypothetical proteinEP164_05090Not AvailableNegative1199595 - 120019122886.3
type vi secretion system tip protein vgrgEP164_05095Not AvailableNegative1200226 - 120223274308.6
type vi secretion system baseplate subunit tssgEP164_05100Not AvailableNegative1202258 - 120321436133.5
type vi secretion system baseplate subunit tssfEP164_05105Not AvailableNegative1203205 - 120501668741.7
type vi secretion system baseplate subunit tsseEP164_05110Not AvailableNegative1205021 - 120546116877.8
type vi secretion system tube protein hcpEP164_05115Not AvailableNegative1205516 - 120601018168.6
type vi secretion system contractile sheath large subunitEP164_05120Not AvailableNegative1206067 - 120754855082.0
type vi secretion system contractile sheath small subunitEP164_05125Not AvailableNegative1207556 - 120810420294.0
dna-packaging proteinEP164_05130Not AvailableNegative1208672 - 120967936269.5

Displaying genes 1191 – 1200 of 4250 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.