Allocoleopsis franciscana PCC 7113

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Coleofasciculales

Family

Coleofasciculaceae

Genus

Allocoleopsis

Description

Allocoleopsis franciscana PCC 7113 is characterized by possessing nine replicons. This multiplicity of replicons may suggest a complex genomic architecture that could contribute to its adaptability and survival in various environments. The organism has several accessions recorded, which include NC_019762.1, NC_019761.1, NC_019760.1, NC_019743.1, NC_019741.1, NC_019740.1, NC_019738.1, NC_019739.1, and NC_019742.1. These accessions provide a genomic basis for further research into the genetic diversity and functional capabilities of Allocoleopsis franciscana. The presence of multiple replicons is often associated with certain ecological advantages, such as enhanced genetic stability and resilience under stress conditions. This trait could enable Allocoleopsis franciscana to thrive in fluctuating environments, which is particularly relevant for organisms living in diverse aquatic habitats. Understanding the genomic structure, particularly the role of these replicons, may shed light on the evolutionary strategies employed by this microalga for adaptation and survival. Such insights could be valuable for ecological studies and biotechnological applications involving this organism.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderColeofasciculales
FamilyColeofasciculaceae
GenusAllocoleopsis
SpeciesAllocoleopsis franciscana
StrainPCC 7113

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

24441 bp

Thymine Count

24773 bp

Guanine Count

22207 bp

Cytosine Count

21611 bp

Genome Length

93032 bp

Protein-coding Genes

68 genes

Non-Coding Genes

3 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
6-carboxytetrahydropterin synthaseMIC7113_RS32635P65871Positive156 - 54514914.6
trna-guanine transglycosylase dpdaMIC7113_RS32640P0DW33Positive753 - 284979144.2
hypothetical proteinMIC7113_RS32645Not AvailablePositive2922 - 380634445.4
hypothetical proteinMIC7113_RS32650Not AvailableNegative3831 - 502144839.4
dna sulfur modification protein dndbMIC7113_RS32655Not AvailableNegative5069 - 617542029.8
hypothetical proteinMIC7113_RS32660Not AvailablePositive6297 - 65399091.85
dead/deah box helicaseMIC7113_RS32665Not AvailablePositive6604 - 11622193403.0
phospholipase d-like domain-containing proteinMIC7113_RS32670Not AvailablePositive11619 - 1242230619.0
nucleotide pyrophosphohydrolaseMIC7113_RS32675P42979Positive12592 - 1290912155.3
duf4351 domain-containing proteinMIC7113_RS32680Not AvailableNegative13196 - 1429942893.5

Displaying genes 1 – 10 of 6800 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0004386N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateC63H103NO12P2Chemical structure of N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1128.461Da
Monoisotopic1127.696649Da
BASm0004877dTDP-4-amino-4,6-dideoxy-alpha-D-galactoseC16H26N3O14P2Chemical structure of dTDP-4-amino-4,6-dideoxy-alpha-D-galactoseNot available
Average546.339Da
Monoisotopic546.089550105Da
BASm0004924UDP-N-acetyl-alpha-D-mannosaminouronateC17H22N3O18P2Chemical structure of UDP-N-acetyl-alpha-D-mannosaminouronateNot available
Average618.3134Da
Monoisotopic618.037358939Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.