Sulfuricella denitrificans skB26

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sulfuricellaceae

Genus

Sulfuricella

Description

Sulfuricella denitrificans skB26 is a Gram-negative, rod-shaped bacterium notable for its psychrotolerant nature, with an optimal growth temperature of 16°C. This characteristic suggests that it thrives in cooler environments, which may include polar or deep-sea habitats. The organism possesses two replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The presence of two replicons can suggest a potential for increased genetic exchange and resilience in varying environmental conditions. The genomic data for Sulfuricella denitrificans skB26 is represented by two accessions: NC_022357.1 and NC_022358.1, which likely contain essential genetic information relevant to its physiology and ecological role. In terms of ecological insight, the psychrotolerant nature of Sulfuricella denitrificans skB26 suggests that it may play a role in biogeochemical processes in cold environments, particularly in sulfur cycling and denitrification. These processes are critical for nutrient cycling and maintaining the ecological balance in its native habitats, which are likely influenced by low temperatures. Thus, this bacterium may contribute to the stability of microbial communities in cold ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySulfuricellaceae
GenusSulfuricella
SpeciesSulfuricella denitrificans
StrainskB26

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sulfuricella denitrificans skB26


Gene Summary

Adenine Count

19176 bp

Thymine Count

18308 bp

Guanine Count

24347 bp

Cytosine Count

24788 bp

Genome Length

86619 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiation proteinSCD_RS15030Not AvailableNegative2 - 78129578.5
para family proteinSCD_RS16260Not AvailablePositive1252 - 206729758.2
parb/repb/spo0j family partition proteinSCD_RS15035Not AvailablePositive2069 - 295333419.2
lexa family proteinSCD_RS15040Not AvailablePositive4023 - 460121137.5
y-family dna polymeraseSCD_RS15045Not AvailablePositive4598 - 587246958.1
sos response-associated peptidaseSCD_RS15050Not AvailablePositive5917 - 658224872.1
hypothetical proteinSCD_RS15055Not AvailableNegative6895 - 729614825.8
hypothetical proteinSCD_RS15065Not AvailablePositive7729 - 843026754.3
hypothetical proteinSCD_RS15070Not AvailablePositive8430 - 945538116.8
helix-turn-helix transcriptional regulatorSCD_RS15075Not AvailableNegative10270 - 1054510444.1

Displaying genes 1 – 10 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

87 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da

Displaying 1–10 of 87 metabolites

Health Effects

No health effects information available for this bacterium.