Clostridioides difficile P28

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile P28 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments. As a chemoorganotroph, it derives energy from organic compounds. The cells of C. difficile P28 are capable of forming chains, pairs, or existing as singles, showcasing its versatile arrangement. This bacterium is mobile, possessing flagella that facilitate movement, allowing it to navigate through its host-associated habitat. C. difficile P28 is mesophilic, with an optimal growth temperature of 37°C, which aligns with the temperature range favorable for many host organisms. It contains a single replicon and has one membrane, characteristic of its cellular structure. The biotic relationship of C. difficile P28 is classified as free living, indicating that while it may be associated with hosts, it can also exist independently in its environment. The genomic information is available under the accession AVMC00000000.1, providing a basis for further study of its genetic characteristics. Ecologically, the presence of C. difficile P28 in the gut microbiome can have significant implications for host health, particularly in relation to gut dysbiosis and antibiotic resistance. Understanding the traits of this microorganism contributes to the broader knowledge of its role in both human health and disease, emphasizing the importance of maintaining a balanced microbiome.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainP28

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile P28
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile P28


Gene Summary

Adenine Count

1206735 bp

Thymine Count

1212017 bp

Guanine Count

945940 bp

Cytosine Count

964217 bp

Genome Length

4328909 bp

Protein-coding Genes

4723 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive883557 - 883568Not Available
Putative integraseQSI_0955Not AvailableNegative897996 - 89956459758.3
hypothetical proteinQSI_0956Not AvailableNegative899640 - 8998919132.93
Site-specific recombinase for integration and excisionQSI_0957Not AvailableNegative899892 - 90145759687.5
AttrNot AvailableNot AvailablePositive901802 - 901813Not Available
Spor domain-containing proteinQSI_0958Not AvailableNegative901860 - 90281334457.9
Phage holinQSI_0959Not AvailableNegative902815 - 90322814956.5
Tail proteinQSI_0960Not AvailableNegative903299 - 90519464935.1
Putative phage tail proteinQSI_0961Not AvailableNegative905209 - 90693063781.6
Hypothetical proteinQSI_0962Not AvailableNegative906927 - 90757723840.2

Displaying genes 1 – 10 of 4803 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

21 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0003112biliverdin IXalphaC33H32N4O6Chemical structure of biliverdin IXalphaNot available
Average580.642Da
Monoisotopic580.233281926Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da

Displaying 1–10 of 21 metabolites

Health Effects

No health effects information available for this bacterium.