Thalassospira xiamenensis M-5 = DSM 17429

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodospirillales

Family

Thalassospiraceae

Genus

Thalassospira

Description

Thalassospira xiamenensis M-5, classified as DSM 17429, is a Gram-negative bacterium characterized by its rod shape. This organism is notable for having two replicons, which suggests a complex genomic organization that could be linked to its adaptability and survival in various environments. The taxonomic classification of Thalassospira xiamenensis is supported by its genetic material, with accessions NZ_CP004389.1 and NZ_CP004388.1 providing essential genomic data for further study. These accessions indicate that the organism has been sequenced, contributing to our understanding of its genetic makeup and potential functional capabilities. Understanding the traits of Thalassospira xiamenensis M-5 is critical for appreciating its role in marine ecosystems. As a member of the Thalassospira genus, this bacterium may play a significant role in nutrient cycling or interactions within its marine habitat. Its Gram-negative status and rod shape may also suggest specific mechanisms of environmental interaction, including biofilm formation or responses to changes in salinity and temperature. The presence of two replicons might further enhance its flexibility in responding to ecological pressures, potentially allowing it to thrive in diverse marine conditions. Thus, the traits of Thalassospira xiamenensis M-5 provide insights into its ecological significance and adaptability in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyThalassospiraceae
GenusThalassospira
SpeciesThalassospira xiamenensis
StrainM-5 = DSM 17429

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thalassospira xiamenensis M-5 = DSM 17429 strain M-5 chromosome,

Gene Summary

Adenine Count

1034971 bp

Thymine Count

1031344 bp

Guanine Count

1251393 bp

Cytosine Count

1258862 bp

Genome Length

4576570 bp

Protein-coding Genes

4139 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is3 family transposaseTH3_RS21210P0CF79Negative230 - 136244423.3
is5 family transposaseTH3_RS22735Not AvailablePositive1468 - 222828994.3
lexa family transcriptional regulatorTH3_RS22745P0A276Negative2773 - 321916856.0
hypothetical proteinTH3_RS21235Not AvailablePositive3615 - 431324989.2
hypothetical proteinTH3_RS21240Not AvailablePositive4383 - 491319677.3
hypothetical proteinTH3_RS22925Not AvailablePositive4919 - 51167480.21
hypothetical proteinTH3_RS21245Not AvailablePositive5127 - 587628094.1
hypothetical proteinTH3_RS21250Not AvailablePositive5876 - 689838675.1
hypothetical proteinTH3_RS21255Not AvailableNegative7381 - 768911759.3
type ii toxin-antitoxin system vapc family toxinTH3_RS21260P55511Negative7686 - 811115395.8

Displaying genes 1 – 10 of 4413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

288 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 288 metabolites

Health Effects

No health effects information available for this bacterium.