Pedobacter glucosidilyticus str. DD6b

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter glucosidilyticus str. DD6b is a Gram-negative, non-motile bacterium characterized by its rod shape. This organism possesses a single replicon and is classified as mesophilic, with an optimal growth temperature of 29°C. Notably, Pedobacter glucosidilyticus str. DD6b does not form spores, which may influence its ecological niche and survival strategies. The presence of flagella in this strain suggests potential adaptations for movement in its environment, although it is classified as non-motile. This may indicate that while the organism has the potential for motility, it does not actively utilize this capability in its current ecological context. The accession number for Pedobacter glucosidilyticus str. DD6b is JMTN00000000.1, which provides a reference for genomic studies and further exploration of its metabolic capabilities. Given its classification within the Pedobacter genus, this bacterium may play a role in the degradation of complex carbohydrates, contributing to nutrient cycling in its habitat. The ecological insight derived from these traits suggests that Pedobacter glucosidilyticus str. DD6b could be involved in the breakdown of organic materials in mesophilic environments, thereby influencing soil health and microbial diversity in its ecosystem. Its characteristics indicate a specialized role in nutrient dynamics, which may be crucial for maintaining the ecological balance within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter glucosidilyticus
StrainDD6b

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter glucosidilyticus str. DD6b
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter glucosidilyticus strain DD6b PBAC_contig000097, whole

Gene Summary

Adenine Count

1264363 bp

Thymine Count

1263493 bp

Guanine Count

676298 bp

Cytosine Count

668224 bp

Genome Length

3872381 bp

Protein-coding Genes

3305 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPBAC_00820Not AvailablePositive97891 - 9900943655.7
anaerobic benzoate catabolism transcriptional regulatorPBAC_00830Not AvailableNegative99047 - 9938813184.0
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligasePBAC_00840Not AvailableNegative99465 - 10083251228.8
ribosomal protein l11 methyltransferasePBAC_00850Not AvailableNegative100839 - 10167531810.8
bifunctional pgk/timPBAC_00860Not AvailableNegative101753 - 10252027691.0
udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferasePBAC_00870Not AvailableNegative102522 - 10370644255.4
50s ribosomal protein l31 type bPBAC_00880Not AvailableNegative103775 - 1040239661.6
methylmalonyl-coa epimerasePBAC_00890Not AvailableNegative104116 - 10451715123.3
cysteine desulfurasePBAC_00900Not AvailablePositive104639 - 10585344490.3
nifu-like proteinPBAC_00910Not AvailablePositive106004 - 10641714827.6

Displaying genes 91 – 100 of 3353 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.