Pedobacter glucosidilyticus str. DD6b

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter glucosidilyticus strain DD6b is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This organism is likely adapted to moderate thermal environments, which may influence its ecological niches and metabolic activities. The rod shape of P. glucosidilyticus suggests a potential capacity for motility, although specific details regarding flagellation or movement are not provided. As a member of the Pedobacter genus, this strain may play a role in the degradation of complex carbohydrates, as indicated by its species designation, which highlights its glucosidase activity. While the specific metabolic pathways and substrate preferences of strain DD6b are not detailed, the ability to hydrolyze glycosidic bonds can be critical for nutrient cycling in its habitat. Understanding the traits of P. glucosidilyticus str. DD6b allows for insights into its potential applications in biotechnological processes, particularly in the degradation of polysaccharides in various environments. This underscores the importance of such microbes in ecological processes, especially in organic matter decomposition and nutrient recycling in soil or aquatic systems. The ecological role of this strain may be significant in maintaining microbial diversity and functionality in its native habitat, contributing to overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter glucosidilyticus
StrainDD6b

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter glucosidilyticus str. DD6b


Gene Summary

Adenine Count

1264363 bp

Thymine Count

1263493 bp

Guanine Count

676298 bp

Cytosine Count

668224 bp

Genome Length

3872381 bp

Protein-coding Genes

3305 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Capsid componentPBAC_33150Not Available+3823369 - 382432533156.2
Capsid componentPBAC_33160Not Available+3824870 - 382574832412.3
Dna packaging proteinPBAC_33170Not Available+3825751 - 382618815854.8
Tail componentPBAC_33180Not Available+3826565 - 382714321546.0
Tail componentPBAC_33190Not Available+3827140 - 382753514649.9
Major tail protein vPBAC_33200Not Available+3827543 - 382828325811.2
5s ribosomal rnaNot AvailableNot Available+62 - 172Not Available
23s ribosomal rnaNot AvailableNot Available+331 - 3205Not Available
choline-sulfatasePBAC_00010Not Available-312 - 187459559.9
16s ribosomal rnaNot AvailableNot Available+3696 - 5205Not Available

Displaying genes 1 – 10 of 3353 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites