Citrobacter werkmanii NBRC 105721

Gram-negativeRodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter werkmanii NBRC 105721 is a gram-negative, rod-shaped bacterium recognized for its chemoheterotrophic metabolism, utilizing organic compounds as its primary energy source. This species is motile, possessing flagella that facilitate its movement in various environments. C. werkmanii is classified as mesophilic, indicating that it thrives in moderate temperature ranges, which are typically conducive to microbial growth and activity. The organism has a single replicon, suggesting a streamlined genomic organization that may influence its adaptability and replication. Notably, C. werkmanii does not undergo sporulation, which is a reproductive strategy that allows some bacteria to survive unfavorable conditions. The lack of sporulation in this species could indicate a reliance on stable environments or specific ecological niches where it can effectively compete for resources. The accession number for this strain is BBMW00000000.1, providing a reference for genomic and taxonomic studies. Understanding the traits of C. werkmanii can provide insights into its ecological roles, particularly in nutrient cycling within its habitat. Its ability to thrive in mesophilic conditions and its chemoheterotrophic nature suggest that it may play a significant role in the decomposition of organic material, contributing to soil health and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter werkmanii
StrainNBRC 105721

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter werkmanii NBRC 105721
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Citrobacter werkmanii NBRC 105721 DNA, contig: CIWKM30, whole

Gene Summary

Adenine Count

1191229 bp

Thymine Count

1180129 bp

Guanine Count

1276258 bp

Cytosine Count

1300381 bp

Genome Length

4947997 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

184 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenaseCIWKM_02_00040Not AvailableNegative44410 - 4522228430.1
3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunitCIWKM_02_00050Not AvailableNegative45222 - 4553911214.2
3-phenylpropionate/cinnamic acid dioxygenase beta subunitCIWKM_02_00060Not AvailableNegative45539 - 4605720520.3
3-phenylpropionate/cinnamic acid dioxygenase alpha subunitCIWKM_02_00070Not AvailableNegative46054 - 4741551305.0
hca operon transcriptional activatorCIWKM_02_00080Not AvailablePositive47551 - 4844432772.2
hypothetical protein yphhCIWKM_02_00090Not AvailableNegative48448 - 4964144140.7
hypothetical protein yphgCIWKM_02_00100Not AvailablePositive49756 - 53022123073.0
putative sugar transporterCIWKM_02_00110Not AvailablePositive53095 - 5453451612.1
hypothetical proteinCIWKM_02_00120Not AvailablePositive54534 - 5537631453.6
putative 3-phenylpropionate transporterCIWKM_02_00130Not AvailablePositive55465 - 5661341851.2

Displaying genes 171 – 180 of 4683 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.