Pseudonocardia sp. EC080619-01

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. EC080619-01 is characterized by its rod-shaped morphology, which is a common feature within the genus Pseudonocardia. This species possesses three replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Pseudonocardia sp. EC080619-01 can be accessed through several accession numbers: NZ_CP012185.1, NZ_CP012184.1, and NZ_CP012186.1. These accessions represent distinct segments of its genome, which can provide insights into the organism's genetic makeup and potential functional capabilities. In terms of biological and ecological significance, Pseudonocardia species are known for their role in soil ecosystems, particularly in the degradation of organic materials and the cycling of nutrients. Their rod shape could be advantageous for motility and colonization in various environmental niches. Understanding the genomic characteristics and ecological roles of Pseudonocardia sp. EC080619-01 could illuminate its contributions to soil health and microbial diversity, as well as its potential applications in bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. EC080619-01
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence.

Gene Summary

Adenine Count

32009 bp

Thymine Count

32530 bp

Guanine Count

71584 bp

Cytosine Count

70411 bp

Genome Length

206535 bp

Protein-coding Genes

210 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
osmc family peroxiredoxinAD017_RS09760Not AvailableNegative2102754 - 210319715101.5
l,d-transpeptidaseAD017_RS09765Not AvailableNegative2103315 - 210391120517.9
bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmuAD017_RS09770Not AvailablePositive2104314 - 210580150955.9
ribose-phosphate diphosphokinaseAD017_RS09775Not AvailablePositive2105798 - 210677835267.4
50s ribosomal protein l25/general stress protein ctcAD017_RS09780Not AvailablePositive2107010 - 210768424118.0
aminoacyl-trna hydrolaseAD017_RS09785Not AvailablePositive2107681 - 210827420757.8
fatty acyl-amp ligaseAD017_RS09790Not AvailableNegative2108293 - 210997557891.1
m20/m25/m40 family metallo-hydrolaseAD017_RS09795Not AvailablePositive2110066 - 211143346640.0
llm class f420-dependent oxidoreductaseAD017_RS09800Not AvailablePositive2111481 - 211231130033.6
abc-f family atp-binding cassette domain-containing proteinAD017_RS09805Not AvailableNegative2112552 - 211437266134.8

Displaying genes 3021 – 3030 of 6774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.