Pseudonocardia sp. EC080619-01

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. EC080619-01 is characterized by its rod-shaped morphology, which is a common feature within the genus Pseudonocardia. This species possesses three replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Pseudonocardia sp. EC080619-01 can be accessed through several accession numbers: NZ_CP012185.1, NZ_CP012184.1, and NZ_CP012186.1. These accessions represent distinct segments of its genome, which can provide insights into the organism's genetic makeup and potential functional capabilities. In terms of biological and ecological significance, Pseudonocardia species are known for their role in soil ecosystems, particularly in the degradation of organic materials and the cycling of nutrients. Their rod shape could be advantageous for motility and colonization in various environmental niches. Understanding the genomic characteristics and ecological roles of Pseudonocardia sp. EC080619-01 could illuminate its contributions to soil health and microbial diversity, as well as its potential applications in bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. EC080619-01
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence.

Gene Summary

Adenine Count

32009 bp

Thymine Count

32530 bp

Guanine Count

71584 bp

Cytosine Count

70411 bp

Genome Length

206535 bp

Protein-coding Genes

210 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m50 family metallopeptidaseAD017_RS05655Not AvailableNegative1227746 - 122906247137.8
1-deoxy-d-xylulose-5-phosphate reductoisomeraseAD017_RS05660Not AvailableNegative1229059 - 123020438741.1
duf2631 domain-containing proteinAD017_RS05665Not AvailablePositive1230277 - 12305379549.66
non-homologous end-joining dna ligaseAD017_RS05670Not AvailablePositive1230545 - 123151635909.0
hypothetical proteinAD017_RS05675Not AvailablePositive1231639 - 12318246635.11
g/u mismatch-specific dna glycosylaseAD017_RS05680Not AvailableNegative1231825 - 123238519824.8
atp-dependent dna ligaseAD017_RS05685Not AvailablePositive1232492 - 123356239744.2
laci family dna-binding transcriptional regulatorAD017_RS05690Not AvailableNegative1233630 - 123460733996.4
abc transporter substrate-binding proteinAD017_RS05695Not AvailablePositive1234892 - 123624748900.9
carbohydrate abc transporter permeaseAD017_RS05700Not AvailablePositive1236244 - 123718233977.1

Displaying genes 2211 – 2220 of 6774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.