Pseudonocardia sp. EC080619-01

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. EC080619-01 is characterized by its rod-shaped morphology, which is a common feature within the genus Pseudonocardia. This species possesses three replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Pseudonocardia sp. EC080619-01 can be accessed through several accession numbers: NZ_CP012185.1, NZ_CP012184.1, and NZ_CP012186.1. These accessions represent distinct segments of its genome, which can provide insights into the organism's genetic makeup and potential functional capabilities. In terms of biological and ecological significance, Pseudonocardia species are known for their role in soil ecosystems, particularly in the degradation of organic materials and the cycling of nutrients. Their rod shape could be advantageous for motility and colonization in various environmental niches. Understanding the genomic characteristics and ecological roles of Pseudonocardia sp. EC080619-01 could illuminate its contributions to soil health and microbial diversity, as well as its potential applications in bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. EC080619-01
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence.

Gene Summary

Adenine Count

32009 bp

Thymine Count

32530 bp

Guanine Count

71584 bp

Cytosine Count

70411 bp

Genome Length

206535 bp

Protein-coding Genes

210 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative lipid ii flippase ftswAD017_RS02805Not AvailableNegative605301 - 60658444920.3
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseAD017_RS02810Not AvailableNegative606581 - 60806849085.4
phospho-n-acetylmuramoyl-pentapeptide- transferaseAD017_RS02815Not AvailableNegative608041 - 60911137970.0
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAD017_RS02820Not AvailableNegative609108 - 61056248374.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseAD017_RS02825Not AvailableNegative610681 - 61228555017.5
peptidoglycan d,d-transpeptidase ftsi family proteinAD017_RS02830Not AvailableNegative612598 - 61443664017.2
septum formation initiatorAD017_RS02835Not AvailableNegative614436 - 61513723549.4
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhAD017_RS02840Not AvailableNegative615175 - 61618836404.1
division/cell wall cluster transcriptional repressor mrazAD017_RS02845Not AvailableNegative616557 - 61698816214.1
aaa family atpaseAD017_RS02850Not AvailablePositive618364 - 61942537018.5

Displaying genes 1631 – 1640 of 6774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.