Rhodococcoides fascians D188

Cocci

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcoides

Description

Rhodococcoides fascians D188 is a Gram-positive bacterium characterized by its cocci shape. This species is notable for having three replicons, which suggests a complex genomic structure that may confer advantages in adaptability and diversity. The genome of R. fascians D188 has been sequenced, with accessions available under NZ_CP015237.1, NZ_CP015236.1, and NZ_CP015235.1. The presence of multiple replicons could indicate a potential for horizontal gene transfer or the capacity to maintain various genetic elements that may enhance survival in diverse environments. This trait could be particularly relevant for understanding the ecological roles of R. fascians D188, especially in soil or plant-associated habitats where such bacteria often thrive. While specific ecological insights about R. fascians D188 remain limited, its Gram-positive nature and cocci morphology suggest that it may be involved in interactions with plant systems or soil microbiomes. Overall, the genomic complexity and morphological characteristics of Rhodococcoides fascians D188 highlight the potential for this organism to play a significant role in microbial ecology and possibly in biotechnological applications related to plant health or soil fertility.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcoides
SpeciesRhodococcoides fascians
StrainD188

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcoides fascians D188 chromosome, complete genome.

Gene Summary

Adenine Count

911911 bp

Thymine Count

903609 bp

Guanine Count

1660754 bp

Cytosine Count

1663714 bp

Genome Length

5139988 bp

Protein-coding Genes

4783 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ph domain-containing proteinA3L23_RS00305Not AvailableNegative61990 - 6258922129.8
biotin--[acetyl-coa-carboxylase] ligaseA3L23_RS00310Not AvailableNegative62637 - 6347329565.3
acyl-coa carboxylase subunit betaA3L23_RS00315Not AvailablePositive63569 - 6520958374.6
acyl-coa carboxylase epsilon subunitA3L23_RS00320Not AvailablePositive65206 - 654759089.26
nucleoside triphosphate pyrophosphataseA3L23_RS00325Not AvailablePositive65487 - 6615522510.7
flavodoxin domain-containing proteinA3L23_RS00330Not AvailableNegative66171 - 6661415934.5
hypothetical proteinA3L23_RS00335Not AvailableNegative66730 - 6810347331.0
glycosyltransferaseA3L23_RS00340Not AvailablePositive68258 - 6952344910.4
hypothetical proteinA3L23_RS00345Not AvailableNegative69529 - 7087547235.2
condensation domain-containing proteinA3L23_RS00350Not AvailablePositive71426 - 7287452979.7

Displaying genes 61 – 70 of 5184 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

64 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da

Displaying 1–10 of 64 metabolites

Health Effects

No health effects information available for this bacterium.