Escherichia coli PCN033

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli PCN033 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, allowing it to thrive in environments with or without oxygen. This organism is typically found in host-associated habitats, indicating its role in the microbiota of various hosts. E. coli PCN033 can exist in pairs or singles, showcasing a versatile cell arrangement that may facilitate its adaptation to different ecological niches. This strain is motile, possessing flagella that enable movement, which can be crucial for colonization and interaction with the host environment. The optimal growth temperature for E. coli PCN033 is 37°C, which aligns with the body temperature of many mammals, further emphasizing its association with host organisms. It falls within the mesophilic temperature range, indicating it thrives in moderate temperature environments. E. coli PCN033 possesses four replicons and has a double-membrane structure, characteristic of Gram-negative bacteria. The presence of multiple replicons may suggest a complex genetic landscape that could contribute to its adaptability and resilience in diverse environments. As a free-living organism, E. coli PCN033 plays a significant role in the microbial ecosystem, potentially contributing to nutrient cycling and influencing the health of its host. Its adaptability to various oxygen levels and its motility highlight its ecological versatility, which is essential for its survival and function in host-associated habitats. The accessions associated with this strain (NZ_CP006632.1; NZ_CP006633.1; NZ_CP006634.1; NZ_CP006635.1) provide resources for further genomic studies that may elucidate its biological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainPCN033

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli PCN033
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli PCN033 chromosome, complete genome.

Gene Summary

Adenine Count

1229002 bp

Thymine Count

1229083 bp

Guanine Count

1264457 bp

Cytosine Count

1265415 bp

Genome Length

4987957 bp

Protein-coding Genes

4442 genes

Non-Coding Genes

391 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding transcriptional regulator rtcrPPECC33_RS18560P38035Positive3749369 - 375096760238.5
deor/glpr family transcriptional regulatorPPECC33_RS18565P0ACL0Negative3750949 - 375170728049.6
rhomboid family intramembrane serine protease glpgPPECC33_RS18570B7UKC8Negative3751724 - 375255431289.4
thiosulfate sulfurtransferase glpePPECC33_RS18575A7ZSV5Negative3752599 - 375292512083.1
glycerol-3-phosphate dehydrogenasePPECC33_RS18580P13035Positive3753115 - 375462056767.8
hypothetical proteinPPECC33_RS27820P76692Negative3754888 - 37551098147.65
glycogen phosphorylasePPECC33_RS18590P0AC86Negative3755234 - 375768193088.6
glycogen synthase glgaPPECC33_RS18595A7ZSW2Negative3757700 - 375913352767.4
glucose-1-phosphate adenylyltransferasePPECC33_RS18600A7ZSW3Negative3759133 - 376042848700.4
glycogen debranching protein glgxPPECC33_RS18605B7NE41Negative3760446 - 376241973607.6

Displaying genes 3721 – 3730 of 5020 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.