Emticicia oligotrophica DSM 17448

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Leadbetterellaceae

Genus

Emticicia

Description

Emticicia oligotrophica DSM 17448 is a Gram-negative, non-spore-forming bacterium characterized by its rod-shaped morphology and aerobic metabolic requirements. This organism thrives optimally at a temperature of 37.0°C, suggesting it is well-adapted to moderate thermal environments, which is a common trait among many mesophilic bacteria. As a member of the microbial community, Emticicia oligotrophica may play a significant role in nutrient cycling within its ecological niche, particularly in oligotrophic environments where nutrient availability is limited. Its aerobic nature implies that it relies on oxygen for its metabolic processes, which could influence its interactions with other microorganisms and its role in biogeochemical cycles. Further studies could elucidate the specific contributions of Emticicia oligotrophica to its environment, particularly regarding its potential for biodegradation or nutrient assimilation within low-nutrient ecosystems. Understanding its metabolic pathways and ecological interactions may provide insights into the adaptability and resilience of microbial communities facing nutrient scarcity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyLeadbetterellaceae
GenusEmticicia
SpeciesEmticicia oligotrophica
StrainDSM 17448

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Emticicia oligotrophica DSM 17448 plasmid pEMTOL05, complete

Gene Summary

Adenine Count

11509 bp

Thymine Count

11793 bp

Guanine Count

5609 bp

Cytosine Count

5230 bp

Genome Length

34141 bp

Protein-coding Genes

24 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEMTOL_RS21500Not AvailablePositive20306 - 2169454011.5
hypothetical proteinEMTOL_RS22610Not AvailableNegative21948 - 221547672.6
histidine kinase dimerization/phosphoacceptor domain-containing proteinEMTOL_RS22615Not AvailablePositive22282 - 2265014398.1
sensor histidine kinaseEMTOL_RS21510Not AvailablePositive22605 - 2296413647.0
lta synthase family proteinEMTOL_RS21515Not AvailableNegative23026 - 2499376304.0
yaio family outer membrane beta-barrel proteinEMTOL_RS21520Not AvailableNegative25047 - 2580829578.1
hypothetical proteinEMTOL_RS21525Not AvailableNegative25871 - 2625115189.3
glycosyltransferase family 2 proteinEMTOL_RS21530Not AvailableNegative26259 - 2767454040.6
hypothetical proteinEMTOL_RS21535Not AvailableNegative27694 - 2856333867.6
response regulatorEMTOL_RS21540Not AvailableNegative28934 - 2933215253.6

Displaying genes 11 – 20 of 4339 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da
BASm0014074LevanC18H32O16Chemical structure of Levan9013-95-0
Average504.4371Da
Monoisotopic504.169034976Da
BASm0014079FuranC4H4OChemical structure of Furan110-00-9
Average68.074Da
Monoisotopic68.02621475Da
BASm0014084GlycogenC24H42O21Chemical structure of Glycogen9005-79-2
Average666.5777Da
Monoisotopic666.221858406Da
BASm0014085AmylopectinC30H52O26Chemical structure of Amylopectin9037-22-3
Average828.7183Da
Monoisotopic828.274681836Da
BASm0014086Amylose(C12H20O11)nC2H6Chemical structure of Amylose9005-82-7Not available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.