Capnocytophaga canimorsus Cc5

Gram-negativeRodNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Capnocytophaga

Description

Capnocytophaga canimorsus Cc5.G. R. Cornelis' lab, Biozentrum, Basel University, Switzerland.Capnocytophaga canimorsus clinical isolate 5 does not express any classical complex virulence function (e.g. T3SS, T4SS or T6SS) but presents a very high relative number of surface-exposed complexes classically encoded by the so called polysaccharide utilization loci (PULs), a hallmark of the CFB group. Recent works in our lab showed that PUL-encoded complexes are not only essential for feeding on host polysaccharides but also required for local control of host immunity by Cc5. The genome of Cc5 is thus a valuable tool for the understanding of commensal cross-talks in mammalians oral cavity and their pathogenic extend when host features change. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCapnocytophaga
SpeciesCapnocytophaga canimorsus
StrainCc5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Capnocytophaga canimorsus Cc5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Canis lupus familiaris, Felis catus
Cell arrangementNot Available
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Capnocytophaga canimorsus Cc5, complete sequence.

Gene Summary

Adenine Count

822781 bp

Thymine Count

820105 bp

Guanine Count

463371 bp

Cytosine Count

465149 bp

Genome Length

2571406 bp

Protein-coding Genes

2234 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoamide acetyltransferase family proteinCCAN_RS03400P37942Negative761136 - 76260854645.1
recombination mediator recrCCAN_RS03405A5FN24Negative762731 - 76334822880.7
diaminopimelate decarboxylaseCCAN_RS03410O27390Negative763744 - 76495545331.4
polysaccharide deacetylase family proteinCCAN_RS03415Q8DP63Negative765153 - 76664656694.5
udp-n-acetylmuramate--l-alanine ligaseCCAN_RS03420A4XGE5Positive766864 - 76822851415.9
mota/tolq/exbb proton channel family proteinCCAN_RS03425O27101Positive768293 - 76899124813.7
biopolymer transporter exbdCCAN_RS03430Not AvailablePositive769018 - 76940414546.0
hypothetical proteinCCAN_RS03435Not AvailablePositive769416 - 77028231299.0
folylpolyglutamate synthase/dihydrofolate synthase family proteinCCAN_RS03440D4GW05Positive770347 - 77156144816.9
transposaseCCAN_RS12330Not AvailablePositive771819 - 77216013587.4

Displaying genes 681 – 690 of 1948 in total

Metabolites

281 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 281 metabolites

Health Effects

Health ConditionRelationReference
SepsisCausesPMC4780008
Wound infectionsCausesPMC4780008

Displaying health effects 1 – 2 of 2 in total