Capnocytophaga canimorsus strain H5594

Gram-negativeRodNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Capnocytophaga

Description

Capnocytophaga canimorsus strain H5594 is a Gram-negative, nonsporulating rod-shaped bacterium classified within the genus Capnocytophaga. This strain exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, which may be characteristic of its natural habitats. As a chemoheterotroph, C. canimorsus strain H5594 derives its energy from organic compounds, further supporting its role in diverse ecological niches. Optimal growth occurs at 37.0°C, a temperature that aligns with the physiological conditions typically encountered in warm-blooded hosts. The bacterium is known to inhabit multiple environments, suggesting adaptability to various ecological settings, potentially including both commensal and pathogenic associations in host organisms. The physiological traits of C. canimorsus strain H5594 underscore its potential role in the microbiota of domestic animals, particularly canines, which may serve as reservoirs for this microbe. Understanding the ecological dynamics and interactions of this strain within its habitats could provide insights into its contributions to microbial communities and its potential influence on host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCapnocytophaga
SpeciesCapnocytophaga canimorsus
Strainstrain H5594

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Capnocytophaga canimorsus strain H5594
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Capnocytophaga canimorsus strain H5594


Gene Summary

Adenine Count

797950 bp

Thymine Count

793845 bp

Guanine Count

452328 bp

Cytosine Count

449705 bp

Genome Length

2493828 bp

Protein-coding Genes

2226 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
low molecular weight protein-tyrosine-phosphataseCGC56_RS00010Not Available+1291 - 175217145.3
sam-dependent methyltransferaseCGC56_RS00015Not Available+1768 - 246925752.4
sodium:solute symporterCGC56_RS00020Not Available-2459 - 387752883.2
anhydro-n-acetylmuramic acid kinaseCGC56_RS00025Not Available-3984 - 506340446.2
orotidine-5'-phosphate decarboxylaseCGC56_RS00030Not Available+5466 - 627830262.1
type i phosphomannose isomerase catalytic subunitCGC56_RS00035Not Available-6279 - 724136698.6
ig-like domain-containing proteinCGC56_RS00040Not Available+7478 - 889351048.9
tlpa family protein disulfide reductaseCGC56_RS00045Not Available-9166 - 1053352461.9
protein translocase subunit secdfCGC56_RS00050Not Available+10808 - 13753107622.0
dihydrolipoyl dehydrogenaseCGC56_RS00055Not Available+13903 - 1530950746.5

Displaying genes 1 – 10 of 2282 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

25 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001514Fe(III)-enterobactinC30H21FeN3O15Chemical structure of Fe(III)-enterobactinNot available
Average719.344Da
Monoisotopic719.0322092Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002981N(6)-hydroxy-L-lysineC6H14N2O3Chemical structure of N(6)-hydroxy-L-lysineNot available
Average162.189Da
Monoisotopic162.1004423Da

Displaying 1–10 of 25 metabolites