Runella slithyformis DSM 19594

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella slithyformis DSM 19594.This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella slithyformis
StrainDSM 19594

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella slithyformis DSM 19594 plasmid pRUNSL05, complete

Gene Summary

Adenine Count

10807 bp

Thymine Count

10841 bp

Guanine Count

8473 bp

Cytosine Count

8663 bp

Genome Length

38784 bp

Protein-coding Genes

32 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family dna-binding transcriptional regulatorRUNSL_RS11085Not AvailablePositive2588933 - 258996438867.7
n-acetylmuramoyl-l-alanine amidaseRUNSL_RS11090Not AvailablePositive2589936 - 259119847939.2
carbohydrate-binding family 9-like proteinRUNSL_RS11095Not AvailablePositive2591243 - 259190525247.8
glycosyl hydrolase family 28 proteinRUNSL_RS11105Not AvailablePositive2592364 - 259470986358.8
gliding motility-associated c-terminal domain-containing proteinRUNSL_RS11110Not AvailableNegative2595170 - 259704466627.6
fg-gap repeat proteinRUNSL_RS11115Not AvailableNegative2597836 - 259854626642.7
lamg-like jellyroll fold domain-containing proteinRUNSL_RS11120Not AvailableNegative2598570 - 260019260345.7
hypothetical proteinRUNSL_RS11125Not AvailableNegative2600223 - 260066015719.9
t9ss type a sorting domain-containing proteinRUNSL_RS11130Not AvailableNegative2600679 - 260171337157.4
hypothetical proteinRUNSL_RS11135Not AvailableNegative2601721 - 260276137024.8

Displaying genes 2341 – 2350 of 5890 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.