Pantoea vagans C9-1

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea vagans
StrainC9-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pantoea vagans C9-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pantoea vagans C9-1 plasmid pPag1, complete sequence.

Gene Summary

Adenine Count

39838 bp

Thymine Count

39186 bp

Guanine Count

44283 bp

Cytosine Count

44676 bp

Genome Length

167983 bp

Protein-coding Genes

145 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3461 family proteinPVAG_RS04910Not AvailableNegative222162 - 22255415387.2
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferasePVAG_RS04915Not AvailableNegative222779 - 22360329720.5
bifunctional uridylyltransferase/uridylyl-removing protein glndPVAG_RS04920Not AvailableNegative223687 - 226341101982.0
type i methionyl aminopeptidasePVAG_RS04925Not AvailableNegative226408 - 22720229371.4
30s ribosomal protein s2PVAG_RS04930Not AvailablePositive227521 - 22824626703.1
translation elongation factor tsPVAG_RS04935Not AvailablePositive228428 - 22927930247.4
ump kinasePVAG_RS04940Not AvailablePositive229437 - 23016226023.8
ribosome recycling factorPVAG_RS04945Not AvailablePositive230306 - 23086320799.9
1-deoxy-d-xylulose-5-phosphate reductoisomerasePVAG_RS04950Not AvailablePositive230975 - 23217142483.1
(2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthasePVAG_RS04955Not AvailablePositive232353 - 23310528009.1

Displaying genes 991 – 1000 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm00100303''-O-acetyl-ADP-D-riboseC17H23N5O15P2Chemical structure of 3''-O-acetyl-ADP-D-riboseNot available
Average599.34Da
Monoisotopic599.0676862Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm00346962'-O-Acetyl adenosine-5-diphosphoriboseC17H25N5O15P2Chemical structure of 2'-O-Acetyl adenosine-5-diphosphoriboseNULL
Average601.355Da
Monoisotopic601.082239121Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.