Pantoea vagans C9-1

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea vagans
StrainC9-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pantoea vagans C9-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pantoea vagans C9-1 plasmid pPag2, complete sequence.

Gene Summary

Adenine Count

40245 bp

Thymine Count

40704 bp

Guanine Count

42224 bp

Cytosine Count

42520 bp

Genome Length

165693 bp

Protein-coding Genes

163 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate phosphodiesterasePVAG_RS00005Not AvailableNegative150 - 133743751.3
ggdef domain-containing phosphodiesterasePVAG_RS00010Not AvailableNegative1644 - 342865981.5
duf3606 domain-containing proteinPVAG_RS00015Not AvailableNegative3942 - 41668950.54
hypothetical proteinPVAG_RS22695Not AvailablePositive4538 - 47778704.57
hsp20 family proteinPVAG_RS00020Not AvailablePositive4952 - 544018115.2
merr family transcriptional regulatorPVAG_RS00025Not AvailableNegative5514 - 627827982.4
hypothetical proteinPVAG_RS24075Not AvailableNegative6194 - 63706032.49
csbd family proteinPVAG_RS00030Not AvailableNegative6480 - 66898351.65
diguanylate phosphodiesterasePVAG_RS00035Not AvailableNegative6863 - 807745391.8
hypothetical proteinPVAG_RS00040Not AvailablePositive9024 - 92578730.08

Displaying genes 1 – 10 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.