Novosphingobium sp. PP1Y

Gram-negativeBacilliMotileObligate aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. PP1Y
Strainsp. PP1Y

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Novosphingobium sp. PP1Y
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. PP1Y plasmid Lpl, complete sequence.

Gene Summary

Adenine Count

37629 bp

Thymine Count

37847 bp

Guanine Count

58360 bp

Cytosine Count

58267 bp

Genome Length

192103 bp

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPP1Y_RS00315Not AvailablePositive10686 - 1112915428.4
duf736 domain-containing proteinPP1Y_RS00320Not AvailablePositive11707 - 1203311892.9
transcriptional regulator domain-containing proteinPP1Y_RS00325Not AvailablePositive12226 - 124357667.12
dna -binding domain-containing proteinPP1Y_RS26205Not AvailablePositive12710 - 1303912547.3
helix-turn-helix transcriptional regulatorPP1Y_RS00335Not AvailablePositive13131 - 133889305.08
replication initiator protein aPP1Y_RS00340Not AvailablePositive13430 - 1427532214.8
duf2840 domain-containing proteinPP1Y_RS00345Not AvailablePositive14496 - 1501719353.4
conjugative transfer signal peptidase trafPP1Y_RS00350Not AvailablePositive15014 - 1561321709.4
duf736 domain-containing proteinPP1Y_RS00355Not AvailablePositive15664 - 159369611.29
lytic transglycosylase domain-containing proteinPP1Y_RS00360Not AvailablePositive15941 - 1666625470.4

Displaying genes 11 – 20 of 4953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.