Novosphingobium sp. PP1Y

Gram-negativeBacilliMotileObligate aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. PP1Y
Strainsp. PP1Y

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Novosphingobium sp. PP1Y
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. PP1Y plasmid Lpl, complete sequence.

Gene Summary

Adenine Count

37629 bp

Thymine Count

37847 bp

Guanine Count

58360 bp

Cytosine Count

58267 bp

Genome Length

192103 bp

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPP1Y_RS07240Not AvailableNegative233669 - 2338727013.05
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolasePP1Y_RS07245Not AvailableNegative233892 - 23548456378.9
dicarboxylate/amino acid:cation symporterPP1Y_RS07250Not AvailableNegative235585 - 23682041755.3
phosphoglucosamine mutasePP1Y_RS07255Not AvailablePositive236972 - 23831246917.4
duf1272 domain-containing proteinPP1Y_RS07260Not AvailablePositive238312 - 2385398201.58
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinasePP1Y_RS07265Not AvailablePositive238655 - 23940125361.3
log family proteinPP1Y_RS07270Not AvailableNegative239415 - 24028732913.4
ld-carboxypeptidasePP1Y_RS07275Not AvailablePositive240402 - 24145736967.5
hypothetical proteinPP1Y_RS07280Not AvailableNegative241497 - 24183812320.7
diguanylate cyclasePP1Y_RS07285Not AvailablePositive242207 - 24393161822.5

Displaying genes 511 – 520 of 4953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.