Burkholderia glumae BGR1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia glumae causes grain and seedling rot in rice and bacterial wilt in many field crops; bacterial rice grain rot is becoming prevalent in many rice-growing countries, including China, Japan, Vietnam, the Philippines, India and the USA. The bacterium infects rice panicles at the flowering stage and causes serious yield losses when temperature and humidity are favorable for successful infection and in vivo proliferation. The bacterium produces yellow pigments, toxoflavin, reumycin, and fervenulin. Among these, toxoflavin is the most critical virulence factor of the bacterium. Strain BGR1 was isolated in Korea (adapted from PMID 19329631). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia glumae
StrainBGR1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Burkholderia glumae BGR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Homo sapiens, Oryza sativa
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Burkholderia glumae BGR1 chromosome 1, complete sequence.

Gene Summary

Adenine Count

622948 bp

Thymine Count

622788 bp

Guanine Count

1332046 bp

Cytosine Count

1328725 bp

Genome Length

3906507 bp

Protein-coding Genes

3376 genes

Non-Coding Genes

376 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath large subunitBGLU_RS18950Not AvailablePositive245902 - 24743457625.7
type vi secretion system vgr family proteinBGLU_RS18955Not AvailablePositive247532 - 24988386769.8
duf4123 domain-containing proteinBGLU_RS18960Not AvailablePositive249880 - 25086338115.2
duf3304 domain-containing proteinBGLU_RS18965Not AvailablePositive250866 - 25166329445.9
duf2235 domain-containing proteinBGLU_RS18970Not AvailablePositive251656 - 25391184251.9
choice-of-anchor tandem repeat glover-containing proteinBGLU_RS32655Not AvailablePositive253964 - 25553555824.4
paar domain-containing proteinBGLU_RS32660Not AvailablePositive255701 - 2558806238.29
hypothetical proteinBGLU_RS18975Not AvailablePositive255884 - 25717346898.7
imcf-related family proteinBGLU_RS18980Not AvailablePositive257170 - 260691127890.0
atp-binding proteinBGLU_RS36765Not AvailablePositive260747 - 2609146138.45

Displaying genes 701 – 710 of 3207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00152703-(L-alanyl-L-homoserinyl-L-aspartyl-βcarboxy)-4-hydroxy-5-oxopyrazoleC14H21N5O9Chemical structure of 3-(L-alanyl-L-homoserinyl-L-aspartyl-βcarboxy)-4-hydroxy-5-oxopyrazoleNULL
Average403.348Da
Monoisotopic403.133927276Da
BASm0015828L-alanyl-L-homoserinyl-L-aspartic acidC11H19N3O7Chemical structure of L-alanyl-L-homoserinyl-L-aspartic acidNULL
Average305.287Da
Monoisotopic305.122299964Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
Bacterial panicle blightCausesPMC7368126
Rice panicle blightCausesPMC7444824

Displaying health effects 1 – 2 of 2 in total