Burkholderia glumae BGR1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia glumae causes grain and seedling rot in rice and bacterial wilt in many field crops; bacterial rice grain rot is becoming prevalent in many rice-growing countries, including China, Japan, Vietnam, the Philippines, India and the USA. The bacterium infects rice panicles at the flowering stage and causes serious yield losses when temperature and humidity are favorable for successful infection and in vivo proliferation. The bacterium produces yellow pigments, toxoflavin, reumycin, and fervenulin. Among these, toxoflavin is the most critical virulence factor of the bacterium. Strain BGR1 was isolated in Korea (adapted from PMID 19329631). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia glumae
StrainBGR1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Burkholderia glumae BGR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Homo sapiens, Oryza sativa
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Burkholderia glumae BGR1 chromosome 1, complete sequence.

Gene Summary

Adenine Count

622948 bp

Thymine Count

622788 bp

Guanine Count

1332046 bp

Cytosine Count

1328725 bp

Genome Length

3906507 bp

Protein-coding Genes

3376 genes

Non-Coding Genes

376 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf979 domain-containing proteinBGLU_RS28205Not AvailableNegative2632803 - 263375332811.4
duf969 domain-containing proteinBGLU_RS28210Not AvailableNegative2633750 - 263450826087.5
hypothetical proteinBGLU_RS35035Not AvailablePositive2634511 - 263485811846.2
cellulose biosynthesis protein bcsdBGLU_RS28215Not AvailablePositive2635352 - 263580716550.6
cellulose biosynthesis protein bcspBGLU_RS28220Not AvailablePositive2635873 - 263676329803.5
cellulose biosynthesis protein bcsqBGLU_RS28225Not AvailablePositive2636760 - 263755127873.2
udp-forming cellulose synthase catalytic subunitBGLU_RS28230Not AvailablePositive2637548 - 263975282045.0
cellulose biosynthesis cyclic di-gmp-binding regulatory protein bcsbBGLU_RS28235Not AvailablePositive2639859 - 264238488079.4
cellulose synthase complex periplasmic endoglucanase bcszBGLU_RS28240Not AvailablePositive2642389 - 264362443235.4
cellulose biosynthesis protein bcscBGLU_RS28245Not AvailablePositive2643615 - 2648444169721.0

Displaying genes 2681 – 2690 of 3207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00152703-(L-alanyl-L-homoserinyl-L-aspartyl-βcarboxy)-4-hydroxy-5-oxopyrazoleC14H21N5O9Chemical structure of 3-(L-alanyl-L-homoserinyl-L-aspartyl-βcarboxy)-4-hydroxy-5-oxopyrazoleNULL
Average403.348Da
Monoisotopic403.133927276Da
BASm0015828L-alanyl-L-homoserinyl-L-aspartic acidC11H19N3O7Chemical structure of L-alanyl-L-homoserinyl-L-aspartic acidNULL
Average305.287Da
Monoisotopic305.122299964Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
Bacterial panicle blightCausesPMC7368126
Rice panicle blightCausesPMC7444824

Displaying health effects 1 – 2 of 2 in total