Alicycliphilus denitrificans BC

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainBC

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alicycliphilus denitrificans BC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans BC plasmid pALIDE01, complete

Gene Summary

Adenine Count

25582 bp

Thymine Count

24340 bp

Guanine Count

35485 bp

Cytosine Count

34311 bp

Genome Length

119718 bp

Protein-coding Genes

121 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnALIDE_RS15145Not AvailableNegative3159391 - 316051541082.4
nucleoside-diphosphate kinaseALIDE_RS15150Not AvailableNegative3160603 - 316102815398.5
pseudouridine synthaseALIDE_RS15155Not AvailableNegative3161107 - 316246249016.1
smc-scp complex subunit scpbALIDE_RS15160Not AvailableNegative3162464 - 316313224219.8
rlua family pseudouridine synthaseALIDE_RS15165Not AvailableNegative3163301 - 316428436256.6
peptidoglycan dd-metalloendopeptidase family proteinALIDE_RS15170Not AvailableNegative3164308 - 316521030771.7
protein-l-isoaspartate(d-aspartate) o-methyltransferaseALIDE_RS15175Not AvailableNegative3165222 - 316599527087.3
5'/3'-nucleotidase sureALIDE_RS15180Not AvailableNegative3165995 - 316677727939.3
ggdef domain-containing proteinALIDE_RS15185Not AvailablePositive3166939 - 316846256388.8
alkaline phosphatase d family proteinALIDE_RS15190Not AvailablePositive3168489 - 317006958666.2

Displaying genes 3371 – 3380 of 4730 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.