Alicycliphilus denitrificans BC

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainBC

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alicycliphilus denitrificans BC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans BC, complete sequence.

Gene Summary

Adenine Count

732539 bp

Thymine Count

738393 bp

Guanine Count

1583552 bp

Cytosine Count

1582529 bp

Genome Length

4637013 bp

Protein-coding Genes

4275 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
TransposaseALIDE_RS22315Not AvailableNegative66153 - 6766756503.7
TransposaseALIDE_RS22320Not AvailableNegative67750 - 6808211905.5
Truncated transposaseALIDE_RS22325Not AvailableNegative68079 - 6850715353.6
phospholipase d family proteinALIDE_RS23765Not AvailablePositive68540 - 6916322035.3
hypothetical proteinALIDE_RS23770Not AvailablePositive69216 - 6958113386.4
Putative prohead proteaseALIDE_RS22330Not AvailablePositive69620 - 7056733700.6
hypothetical proteinALIDE_RS22335Not AvailablePositive70657 - 708607104.16
hypothetical proteinALIDE_RS22340Not AvailableNegative70956 - 711717554.34
hypothetical proteinALIDE_RS23775Not AvailableNegative71289 - 7162111641.6
AttlNot AvailableNot AvailablePositive71699 - 71724Not Available

Displaying genes 1 – 10 of 4730 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.