Alicycliphilus denitrificans BC

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainBC

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alicycliphilus denitrificans BC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans BC plasmid pALIDE01, complete

Gene Summary

Adenine Count

25582 bp

Thymine Count

24340 bp

Guanine Count

35485 bp

Cytosine Count

34311 bp

Genome Length

119718 bp

Protein-coding Genes

121 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system rata family toxinALIDE_RS09660Not AvailablePositive2018120 - 201856016423.7
rnfh family proteinALIDE_RS09665Not AvailablePositive2018570 - 201889611788.2
duf4124 domain-containing proteinALIDE_RS09670Not AvailableNegative2018905 - 201940817829.0
imp dehydrogenaseALIDE_RS09675Not AvailablePositive2019502 - 202097751952.8
glutamine-hydrolyzing gmp synthaseALIDE_RS09680Not AvailablePositive2021051 - 202266758719.0
histidine kinase dimerization/phospho-acceptor domain-containing proteinALIDE_RS09685Not AvailablePositive2022969 - 202382332078.2
citrate synthaseALIDE_RS09690Not AvailableNegative2023960 - 202525547960.8
succinate dehydrogenase assembly factor 2ALIDE_RS09695Not AvailableNegative2025302 - 202557410463.6
succinate dehydrogenase iron-sulfur subunitALIDE_RS09700Not AvailableNegative2025595 - 202629926700.3
succinate dehydrogenase flavoprotein subunitALIDE_RS09705Not AvailableNegative2026328 - 202813365503.8

Displaying genes 2321 – 2330 of 4730 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.