Alicycliphilus denitrificans BC

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainBC

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alicycliphilus denitrificans BC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans BC plasmid pALIDE01, complete

Gene Summary

Adenine Count

25582 bp

Thymine Count

24340 bp

Guanine Count

35485 bp

Cytosine Count

34311 bp

Genome Length

119718 bp

Protein-coding Genes

121 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-methylaconitate cis-trans isomerase prpfALIDE_RS09415Not AvailableNegative1959040 - 196020340334.4
fe/s-dependent 2-methylisocitrate dehydratase acndALIDE_RS09420Not AvailableNegative1960207 - 196282895678.6
2-methylcitrate synthaseALIDE_RS09425Not AvailableNegative1962854 - 196401442461.9
acyl-coa thioesteraseALIDE_RS09430Not AvailableNegative1964011 - 196440613600.7
short-chain fatty acyl-coa regulator family proteinALIDE_RS09435Not AvailablePositive1964509 - 196596952998.6
lysr substrate-binding domain-containing proteinALIDE_RS09440Not AvailableNegative1966081 - 196698932651.6
voc family proteinALIDE_RS09445Not AvailablePositive1967119 - 196750214179.3
esteraseALIDE_RS09450Not AvailablePositive1967552 - 196861939007.9
rna-binding s4 domain-containing proteinALIDE_RS09455Not AvailableNegative1968626 - 196907216437.4
sensor histidine kinaseALIDE_RS09460Not AvailableNegative1969095 - 197049850923.1

Displaying genes 2271 – 2280 of 4730 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.