Deinococcus deserti VCD115

Gram-negativeRodNon-motileAerobe

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) is an aerobic, radiation-resistant bacterium isolated from upper gamma-irradiated sand layers of the Sahara. D. deserti is resistant to gamma radiation, UV radiation, and desiccation due to a very efficient DNA repair mechanism. Heavy UV- and desiccation-induced damage to membranes, proteins and nucleic acids is lethal to most organisms. Vegetative bacteria that survive these stresses must therefore either protect vital components from damage and/or repair them efficiently, especially upon rehydration. The tolerance of D. deserti to high doses of ionizing radiation is a consequence of its response to natural DNA damaging conditions such as desiccation. Repair of massive DNA damage in D. deserti involves widespread DNA repair proteins, such as RecA and PolA. Besides its resistance to high doses of gamma and UV radiation, D. deserti also tolerated prolonged desiccation, with about 50% survival after 40 days of desiccation. The tolerance of D. deserti to desiccation is related to efficient DNA repair rather than DNA protection mechanisms. (adapated from PMID: 19201974). (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus deserti
StrainVCD115

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Deinococcus deserti VCD115
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Deinococcus deserti VCD115 plasmid 3, complete sequence.

Gene Summary

Adenine Count

76123 bp

Thymine Count

76864 bp

Guanine Count

121486 bp

Cytosine Count

121986 bp

Genome Length

396459 bp

Protein-coding Genes

353 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sensor histidine kinaseDEIDE_RS16325Not AvailableNegative71153 - 7265254008.6
apc family permeaseDEIDE_RS16330Not AvailablePositive72739 - 7468869478.2
trkh family potassium uptake proteinDEIDE_RS16335Not AvailablePositive74694 - 7604948415.0
mfs transporterDEIDE_RS16340Not AvailableNegative76441 - 7764941415.4
duf5615 family pin-like proteinDEIDE_RS19285Not AvailableNegative77845 - 7818611832.8
hypothetical proteinDEIDE_RS19290Not AvailablePositive78378 - 786328350.45
bifunctional metallophosphatase/5'-nucleotidaseDEIDE_RS16365Not AvailableNegative78972 - 8059457147.7
bug family tripartite tricarboxylate transporter substrate binding proteinDEIDE_RS16370Not AvailableNegative81052 - 8199933510.7
fad-dependent tricarballylate dehydrogenase tcuaDEIDE_RS16375Not AvailableNegative82063 - 8359255413.2
gntr family transcriptional regulatorDEIDE_RS16380Not AvailablePositive83689 - 8442327219.7

Displaying genes 61 – 70 of 3565 in total

Metabolites

230 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 230 metabolites

Health Effects

No health effects information available for this bacterium.