Deinococcus deserti VCD115

Gram-negativeRodNon-motileAerobe

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) is an aerobic, radiation-resistant bacterium isolated from upper gamma-irradiated sand layers of the Sahara. D. deserti is resistant to gamma radiation, UV radiation, and desiccation due to a very efficient DNA repair mechanism. Heavy UV- and desiccation-induced damage to membranes, proteins and nucleic acids is lethal to most organisms. Vegetative bacteria that survive these stresses must therefore either protect vital components from damage and/or repair them efficiently, especially upon rehydration. The tolerance of D. deserti to high doses of ionizing radiation is a consequence of its response to natural DNA damaging conditions such as desiccation. Repair of massive DNA damage in D. deserti involves widespread DNA repair proteins, such as RecA and PolA. Besides its resistance to high doses of gamma and UV radiation, D. deserti also tolerated prolonged desiccation, with about 50% survival after 40 days of desiccation. The tolerance of D. deserti to desiccation is related to efficient DNA repair rather than DNA protection mechanisms. (adapated from PMID: 19201974). (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus deserti
StrainVCD115

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Deinococcus deserti VCD115
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Deinococcus deserti VCD115 plasmid 2, complete sequence.

Gene Summary

Adenine Count

57175 bp

Thymine Count

57446 bp

Guanine Count

99984 bp

Cytosine Count

99712 bp

Genome Length

314317 bp

Protein-coding Genes

257 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
para family proteinDEIDE_RS16015Not AvailablePositive160 - 94528523.5
parb/repb/spo0j family partition proteinDEIDE_RS16020Not AvailablePositive1002 - 183231456.1
pas domain s-box proteinDEIDE_RS16025Not AvailablePositive2633 - 457971888.7
hypothetical proteinDEIDE_RS19690Not AvailableNegative5103 - 53579367.28
serine hydrolase domain-containing proteinDEIDE_RS16040Not AvailableNegative5710 - 710750063.4
nucleotidyltransferase domain-containing proteinDEIDE_RS16045Not AvailableNegative7271 - 829937887.3
hu family dna-binding proteinDEIDE_RS16050Not AvailablePositive8604 - 896912391.3
duf1348 family proteinDEIDE_RS16055Not AvailablePositive9798 - 1026218741.7
fadr/gntr family transcriptional regulatorDEIDE_RS16060Not AvailableNegative10837 - 1156827424.2
abc transporter substrate-binding proteinDEIDE_RS16065Not AvailablePositive11832 - 1311546862.9

Displaying genes 1 – 10 of 3565 in total

Metabolites

230 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 230 metabolites

Health Effects

No health effects information available for this bacterium.