Rhodothermus marinus DSM 4252

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rhodothermaceae

Genus

Rhodothermus

Description

Rhodothermus marinus is a thermohalophilic bacterium and is the only validly described species in the genus Rhodothermus. It is aerobic, chemoorganotrophic, has been isolated from marine habitats and grows from 54 to 77 degrees Celsius with optimal growth at 65 degrees Celsius. It grows best in 2% NaCl although growth can occur from 0.5% NaCl to over 6% NaCl. Thus it is therefore both thermophilic and slightly but strictly halophilic and can only grow in a very narrow zone in the submarine hot springs, close to their openings, determined by temperature and salt concentration as well as of content of O2 and organic material.Strain DSM 4252 (the type strain) was isolated in 1988 at 2-3m depth (at low tide) from a submarine hot spring at Reykjanes, Isafjardardjup Bay, off the south-west coast of Iceland (adapted from PMID 16075163 and J.Gen.Microbiol 134:299). Cells are 0.5 um in diameter and 2-2.5 um long, without flagella, non-spore forming and without lipid granules, although they form a slime capsule when grown in rich-media (adapted from 10.4056.sigs46736). (HAMAP: RHOM4)

Taxonomy

KingdomPseudomonadati
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRhodothermaceae
GenusRhodothermus
SpeciesRhodothermus marinus
StrainDSM 4252

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Rhodothermus marinus DSM 4252
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature65
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy source Heterotroph
PathogenicityNo

Genome Summary

Rhodothermus marinus DSM 4252, complete sequence.

Gene Summary

Adenine Count

580530 bp

Thymine Count

576129 bp

Guanine Count

1048147 bp

Cytosine Count

1056798 bp

Genome Length

3261604 bp

Protein-coding Genes

2818 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfurtransferaseRMAR_RS04865Q72JV2Positive1119188 - 112005733191.2
sufe family proteinRMAR_RS04870Not AvailablePositive1120164 - 112060116316.9
coa pyrophosphataseRMAR_RS04875A4WBH1Negative1120588 - 112122323436.8
hypothetical proteinRMAR_RS04880Not AvailableNegative1121248 - 112195527823.0
response regulator transcription factorRMAR_RS04885P37478Positive1122105 - 112280626501.0
cell wall metabolism sensor histidine kinase walkRMAR_RS04890O34206Positive1122803 - 112426353702.0
hsp20/alpha crystallin family proteinRMAR_RS04895Q4UKR8Negative1124320 - 112476617099.2
tetratricopeptide repeat proteinRMAR_RS04900Not AvailablePositive1125054 - 112628646095.2
thiamine pyrophosphate-dependent enzymeRMAR_RS15585Not AvailableNegative1126363 - 112849578152.7
cell wall metabolism sensor histidine kinase walkRMAR_RS04910Not AvailableNegative1128647 - 113014356919.8

Displaying genes 1001 – 1010 of 2974 in total

Metabolites

953 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 953 metabolites

Health Effects

No health effects information available for this bacterium.