Rhodothermus marinus DSM 4252

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rhodothermaceae

Genus

Rhodothermus

Description

Rhodothermus marinus is a thermohalophilic bacterium and is the only validly described species in the genus Rhodothermus. It is aerobic, chemoorganotrophic, has been isolated from marine habitats and grows from 54 to 77 degrees Celsius with optimal growth at 65 degrees Celsius. It grows best in 2% NaCl although growth can occur from 0.5% NaCl to over 6% NaCl. Thus it is therefore both thermophilic and slightly but strictly halophilic and can only grow in a very narrow zone in the submarine hot springs, close to their openings, determined by temperature and salt concentration as well as of content of O2 and organic material.Strain DSM 4252 (the type strain) was isolated in 1988 at 2-3m depth (at low tide) from a submarine hot spring at Reykjanes, Isafjardardjup Bay, off the south-west coast of Iceland (adapted from PMID 16075163 and J.Gen.Microbiol 134:299). Cells are 0.5 um in diameter and 2-2.5 um long, without flagella, non-spore forming and without lipid granules, although they form a slime capsule when grown in rich-media (adapted from 10.4056.sigs46736). (HAMAP: RHOM4)

Taxonomy

KingdomPseudomonadati
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRhodothermaceae
GenusRhodothermus
SpeciesRhodothermus marinus
StrainDSM 4252

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Rhodothermus marinus DSM 4252
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature65
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy source Heterotroph
PathogenicityNo

Genome Summary

Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence.

Gene Summary

Adenine Count

26589 bp

Thymine Count

25685 bp

Guanine Count

35211 bp

Cytosine Count

37648 bp

Genome Length

125133 bp

Protein-coding Genes

105 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaRMAR_RS00010A6GYW8Positive165 - 167657918.3
dna polymerase iii subunit betaRMAR_RS00015Not AvailablePositive1734 - 287341820.3
hypothetical proteinRMAR_RS00020Not AvailableNegative2875 - 392439453.2
rna polymerase sigma factorRMAR_RS00025Not AvailableNegative4029 - 466124695.0
50s ribosomal protein l13RMAR_RS00030Q2S6I8Positive4892 - 533516704.5
30s ribosomal protein s9RMAR_RS00035Q03EE9Positive5356 - 575715220.5
30s ribosomal protein s2RMAR_RS00040Q2S6J0Positive5858 - 675733565.2
translation elongation factor tsRMAR_RS00045Q2S6J1Positive6790 - 762030558.7
ump kinaseRMAR_RS00050Q2S6J2Positive7752 - 853728903.2
ribosome recycling factorRMAR_RS00055Q2S6J3Positive8572 - 914121565.1

Displaying genes 1 – 10 of 2974 in total

Metabolites

746 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 746 metabolites

Health Effects

No health effects information available for this bacterium.