Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ureidoglycolate lyase | N824_13260 | Not Available | Positive | 481904 - 482761 | 31046.8 |
| hypothetical protein | N824_13265 | Not Available | Positive | 482712 - 483581 | 33031.2 |
| short-chain dehydrogenase | N824_13270 | Not Available | Positive | 483589 - 484371 | 27331.7 |
| xaa-pro aminopeptidase | N824_13275 | Not Available | Negative | 484552 - 486333 | 62978.9 |
| hypothetical protein | N824_13280 | Not Available | Negative | 486371 - 487318 | 36266.3 |
| thiamine abc transporter permease | N824_13285 | Not Available | Positive | 487512 - 489779 | 83759.0 |
| hypothetical protein | N824_13290 | Not Available | Positive | 489793 - 491139 | 50243.3 |
| rnd transporter | N824_13295 | Not Available | Positive | 491157 - 492257 | 40008.0 |
| copper transporter | N824_13300 | Not Available | Positive | 492261 - 495635 | 125135.0 |
| hypothetical protein | N824_13305 | Not Available | Positive | 496303 - 496659 | 13334.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

