Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | N824_13210 | Not Available | Positive | 470006 - 470833 | 30866.8 |
| hypothetical protein | N824_13215 | Not Available | Positive | 470840 - 471688 | 32520.2 |
| gntr family transcriptional regulator | N824_13220 | Not Available | Positive | 471704 - 472081 | 14903.1 |
| hypothetical protein | N824_13225 | Not Available | Positive | 472129 - 472980 | 31646.0 |
| hypothetical protein | N824_13230 | Not Available | Positive | 473177 - 475534 | 87671.8 |
| hypothetical protein | N824_13235 | Not Available | Positive | 475537 - 477675 | 79260.1 |
| fucose permease | N824_13240 | Not Available | Positive | 477831 - 479081 | 45043.6 |
| hypothetical protein | N824_13245 | Not Available | Positive | 479108 - 479443 | 13132.0 |
| altronate hydrolase | N824_13250 | Not Available | Positive | 479443 - 481101 | 60227.6 |
| short-chain dehydrogenase | N824_13255 | Not Available | Positive | 481064 - 481876 | 28610.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

