Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_21805 | Not Available | Positive | 2354284 - 2355042 | 26775.5 |
| mfs transporter permease | N824_21810 | Not Available | Positive | 2355088 - 2356389 | 48331.2 |
| fe-s oxidoreductase | N824_21815 | Not Available | Positive | 2356513 - 2357250 | 27352.5 |
| threonyl-trna synthetase | N824_21820 | Not Available | Positive | 2357327 - 2359252 | 72961.1 |
| translation initiation factor if-3 | N824_21825 | Not Available | Positive | 2359266 - 2359835 | 21492.3 |
| 50s ribosomal protein l35 | N824_21830 | Not Available | Positive | 2359863 - 2360063 | 7331.21 |
| 50s ribosomal protein l20 | N824_21835 | Not Available | Positive | 2360138 - 2360482 | 12994.0 |
| atp-dependent dethiobiotin synthetase biod | N824_21840 | Not Available | Negative | 2360541 - 2361152 | 22049.8 |
| hypothetical protein | N824_21845 | Not Available | Negative | 2361145 - 2362281 | 41758.9 |
| transcriptional regulator | N824_21850 | Not Available | Negative | 2362303 - 2363079 | 29381.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

