Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxybutyryl-coa dehydrogenase | N824_21755 | Not Available | Negative | 2341696 - 2342589 | 32086.2 |
| pyridoxamine 5'-phosphate oxidase | N824_21760 | Not Available | Negative | 2342600 - 2343250 | 24988.4 |
| hypothetical protein | N824_21765 | Not Available | Positive | 2343298 - 2343861 | 21096.0 |
| n5-carboxyaminoimidazole ribonucleotide mutase | N824_21770 | Not Available | Negative | 2343924 - 2344412 | 17021.8 |
| phosphoribosylaminoimidazole carboxylase | N824_21775 | Not Available | Negative | 2344412 - 2345551 | 42529.3 |
| dna-binding protein | N824_21780 | Not Available | Positive | 2345569 - 2346801 | 45438.6 |
| hypothetical protein | N824_21785 | Not Available | Negative | 2346815 - 2347597 | 29031.3 |
| proteinase inhibitor i4 serpin | N824_21790 | Not Available | Positive | 2347860 - 2349107 | 46229.5 |
| amidohydrolase | N824_21795 | Not Available | Negative | 2349122 - 2352361 | 120031.0 |
| atp-dependent dna helicase recq | N824_21800 | Not Available | Positive | 2352435 - 2354327 | 71507.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

