Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | N824_21705 | Not Available | Positive | 2330159 - 2330884 | 27072.4 |
| dna mismatch repair protein muts | N824_21710 | Not Available | Positive | 2330971 - 2333580 | 97742.4 |
| hypothetical protein | N824_21715 | Not Available | Positive | 2333589 - 2334104 | 19032.1 |
| hypothetical protein | N824_21720 | Not Available | Positive | 2334108 - 2334227 | 4614.82 |
| hypothetical protein | N824_21725 | Not Available | Negative | 2334224 - 2336131 | 72420.0 |
| hypothetical protein | N824_21730 | Not Available | Negative | 2336132 - 2338108 | 74763.7 |
| dna polymerase iii subunit epsilon | N824_21735 | Not Available | Positive | 2338251 - 2339264 | 38802.3 |
| epoxyqueuosine reductase | N824_21740 | Not Available | Negative | 2339311 - 2340222 | 35066.0 |
| hypothetical protein | N824_21745 | Not Available | Positive | 2340329 - 2340538 | 7799.33 |
| holliday junction dna helicase ruvb | N824_21750 | Not Available | Negative | 2340552 - 2341574 | 37630.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

