Pedobacter sp. V48

Motile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. V48 is a Gram-negative bacterium primarily found in sandy environments, specifically within sand microcosms. This microbe is part of the genus Pedobacter, which is typically characterized by its distinctive morphological and biochemical properties. Gram-negative bacteria are known for their complex cell wall structure, which contributes to their resilience in diverse habitats. The habitat of Pedobacter sp. V48 suggests a potential role in the biogeochemical processes within sandy ecosystems, where microorganisms can significantly influence nutrient cycling and organic matter decomposition. The presence of this bacterium in sand microcosms indicates its adaptability to microhabitats that may experience fluctuations in moisture and nutrient availability. Understanding the functional capabilities of Pedobacter sp. V48 within its habitat could shed light on its ecological roles, such as its involvement in the degradation of organic materials or interactions with other microbial species. The study of this bacterium may provide insights into the microbial community dynamics in sandy soils and their contributions to ecosystem health and stability. As such, Pedobacter sp. V48 serves as an intriguing subject for further research into the ecological significance of microorganisms in terrestrial environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. V48
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsand; sand microcosms
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. V48 Contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1961672 bp

Thymine Count

1971998 bp

Guanine Count

1248287 bp

Cytosine Count

1255921 bp

Genome Length

6459990 bp

Protein-coding Genes

5839 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorN824_21655Not AvailablePositive2314676 - 231534125053.3
fosmidomycin resistance proteinN824_21660Not AvailablePositive2315382 - 231661444423.4
hypothetical proteinN824_21665Not AvailableNegative2316675 - 231827359525.6
hypothetical proteinN824_21670Not AvailableNegative2318283 - 2321345112191.0
hypothetical proteinN824_21675Not AvailableNegative2321432 - 232247240024.5
hypothetical proteinN824_21680Not AvailableNegative2322513 - 232314224673.9
hypothetical proteinN824_21685Not AvailablePositive2323425 - 2326586113849.0
hypothetical proteinN824_21690Not AvailablePositive2326599 - 232817658707.6
radical sam proteinN824_21695Not AvailablePositive2328349 - 232954246019.9
phosphoglycerate mutaseN824_21700Not AvailablePositive2329542 - 233015323003.4

Displaying genes 2091 – 2100 of 5895 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.