Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | N824_21605 | Not Available | Negative | 2301506 - 2302351 | 31709.1 |
| n-acetylmuramoyl-l-alanine amidase | N824_21610 | Not Available | Negative | 2302378 - 2303283 | 33732.6 |
| hypothetical protein | N824_21615 | Not Available | Positive | 2303388 - 2305967 | 96877.3 |
| damage-inducible protein cina | N824_21620 | Not Available | Positive | 2305979 - 2307226 | 45381.2 |
| diapophytoene dehydrogenase | N824_21625 | Not Available | Positive | 2307277 - 2308608 | 48386.2 |
| homoserine dehydrogenase | N824_21630 | Not Available | Negative | 2308674 - 2309915 | 46802.0 |
| homoserine o-acetyltransferase | N824_21635 | Not Available | Negative | 2309923 - 2310981 | 39099.8 |
| o-acetylhomoserine aminocarboxypropyltransferase | N824_21640 | Not Available | Negative | 2311007 - 2312311 | 46958.3 |
| cystathionine gamma-synthase | N824_21645 | Not Available | Negative | 2312825 - 2313943 | 40323.6 |
| hypothetical protein | N824_21650 | Not Available | Positive | 2314062 - 2314550 | 17320.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

