Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoglycerate dehydrogenase | N824_21555 | Not Available | Positive | 2293349 - 2294299 | 33690.7 |
| hypothetical protein | N824_21560 | Not Available | Positive | 2294418 - 2295608 | 45662.6 |
| hypothetical protein | N824_21565 | Not Available | Negative | 2295601 - 2295747 | 5599.16 |
| hypothetical protein | N824_21570 | Not Available | Negative | 2295747 - 2296259 | 19794.9 |
| hypothetical protein | N824_21575 | Not Available | Negative | 2296314 - 2297093 | 28851.1 |
| phosphate starvation protein phoh | N824_21580 | Not Available | Positive | 2297196 - 2298161 | 35630.5 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | N824_21585 | Not Available | Positive | 2298197 - 2299150 | 35666.5 |
| anti-anti-sigma factor | N824_21590 | Not Available | Positive | 2299229 - 2299615 | 14430.4 |
| ribonuclease z | N824_21595 | Not Available | Positive | 2299615 - 2300526 | 33993.9 |
| abc transporter permease | N824_21600 | Not Available | Negative | 2300527 - 2301477 | 33853.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

