Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanine--d-alanine ligase | N824_21505 | Not Available | Positive | 2282042 - 2283028 | 36413.9 |
| hypothetical protein | N824_21510 | Not Available | Positive | 2283056 - 2283637 | 22536.7 |
| hypothetical protein | N824_21515 | Not Available | Positive | 2283702 - 2284103 | 15316.0 |
| multidrug transporter mate | N824_21520 | Not Available | Negative | 2284188 - 2285615 | 51232.4 |
| thioesterase | N824_21525 | Not Available | Negative | 2285834 - 2286253 | 16146.5 |
| 30s ribosomal protein s15 | N824_21530 | Not Available | Positive | 2286403 - 2286681 | 10723.2 |
| polynucleotide phosphorylase | N824_21535 | Not Available | Positive | 2286821 - 2288971 | 77854.8 |
| ribulose-phosphate 3-epimerase | N824_21540 | Not Available | Positive | 2289128 - 2289799 | 23881.1 |
| hypothetical protein | N824_21545 | Not Available | Positive | 2289820 - 2292219 | 90663.5 |
| mfs transporter | N824_21550 | Not Available | Positive | 2292270 - 2293337 | 39118.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

