Pedobacter sp. V48

Motile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. V48 is a Gram-negative bacterium primarily found in sandy environments, specifically within sand microcosms. This microbe is part of the genus Pedobacter, which is typically characterized by its distinctive morphological and biochemical properties. Gram-negative bacteria are known for their complex cell wall structure, which contributes to their resilience in diverse habitats. The habitat of Pedobacter sp. V48 suggests a potential role in the biogeochemical processes within sandy ecosystems, where microorganisms can significantly influence nutrient cycling and organic matter decomposition. The presence of this bacterium in sand microcosms indicates its adaptability to microhabitats that may experience fluctuations in moisture and nutrient availability. Understanding the functional capabilities of Pedobacter sp. V48 within its habitat could shed light on its ecological roles, such as its involvement in the degradation of organic materials or interactions with other microbial species. The study of this bacterium may provide insights into the microbial community dynamics in sandy soils and their contributions to ecosystem health and stability. As such, Pedobacter sp. V48 serves as an intriguing subject for further research into the ecological significance of microorganisms in terrestrial environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. V48
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsand; sand microcosms
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. V48 Contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1961672 bp

Thymine Count

1971998 bp

Guanine Count

1248287 bp

Cytosine Count

1255921 bp

Genome Length

6459990 bp

Protein-coding Genes

5839 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinN824_18405Not AvailablePositive1641193 - 164357188702.1
iron abc transporterN824_18410Not AvailablePositive1643640 - 164443730708.2
hypothetical proteinN824_18415Not AvailableNegative1644479 - 164500319143.1
hypothetical proteinN824_18420Not AvailableNegative1645049 - 164746390431.3
prolyl endopeptidaseN824_18425Not AvailablePositive1647640 - 164977879118.8
hypothetical proteinN824_18430Not AvailablePositive1649993 - 16501064528.65
Trna-leuNot AvailableNot AvailablePositive1650235 - 1650316Not Available
peptidylprolyl isomeraseN824_18440Not AvailablePositive1650387 - 165173351351.1
atp-dependent clp protease clppN824_18445Not AvailablePositive1651952 - 165264725742.1
hypothetical proteinN824_18450Not AvailablePositive1652650 - 165315317538.4

Displaying genes 1451 – 1460 of 5895 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.