Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium sp. YBL2 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium sp. YBL2 plasmid 6pYBL2-6, complete sequence.
Gene Summary
Adenine Count
3785 bp
Thymine Count
3786 bp
Guanine Count
5834 bp
Cytosine Count
5934 bp
Genome Length
19339 bp
Protein-coding Genes
16 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
7
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trbc/virb2 family protein | TZ53_RS22585 | Not Available | Positive | 44470 - 44808 | 11751.8 |
| type iv secretion system protein virb3 | TZ53_RS22590 | Not Available | Positive | 44805 - 45155 | 12592.6 |
| virb4 family type iv secretion/conjugal transfer atpase | TZ53_RS22595 | Not Available | Positive | 45142 - 47559 | 89718.5 |
| type iv secretion system protein | TZ53_RS22600 | Not Available | Positive | 47563 - 48276 | 25214.8 |
| type iv secretion system protein | TZ53_RS22605 | Not Available | Positive | 48513 - 49457 | 33632.2 |
| virb8 family protein | TZ53_RS22610 | Not Available | Positive | 49798 - 50496 | 26316.0 |
| p-type conjugative transfer protein virb9 | TZ53_RS22615 | Not Available | Positive | 50493 - 51350 | 31367.2 |
| type iv secretion system protein virb10 | TZ53_RS22620 | Not Available | Positive | 51354 - 52580 | 42146.8 |
| p-type dna transfer atpase virb11 | TZ53_RS22625 | Not Available | Positive | 52584 - 53588 | 36419.6 |
| type iv secretory system conjugative dna transfer family protein | TZ53_RS22630 | Not Available | Positive | 53572 - 55536 | 70712.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
